CK933935

Overview
NameCK933935
Unique NameCK933935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933935_ssr72 microsatellite CK933935_ssr72:72..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933935_ssr5 microsatellite CK933935_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1642 contig Csv1_Contig1642:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBS (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain SDF) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y A A+ +LP  +F Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBC (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ACICU) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y A A+ +LP  +F Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB5 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB0057) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y A A+ +LP  +F Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB3 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB307-0294) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y A A+ +LP  +F Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 41/122 (33.61%), Postives = 62/122 (50.82%), Query Frame = 3
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +Y A A+ +LP  +F Y   GA  + TL+ N    + I  R RIL ++S + + T + G K++MP+++AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYGEHTLRRNTADLADIALRQRILKNMSDLSLETQLFGEKLAMPVVLAPVGLTGMYARRGEVQAARAAAQKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_ECO27 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 3
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL  N    S +  R RIL ++S + + TT+   K+SMP+ + P  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLHRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_SALCH (L-lactate dehydrogenase [cytochrome] OS=Salmonella choleraesuis GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S++  R R+L ++S + + TT+    + MP+ +AP  +  M    GE          G   TLS+ S   +EEVA T     +FQLY
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLPMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_AGRVS (L-lactate dehydrogenase [cytochrome] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 38/127 (29.92%), Postives = 66/127 (51.97%), Query Frame = 3
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y   A+ +LP  +F Y   GA  + T++ N +  + +  R R+L  V  +D+STT+   +++MP+++AP  +  M    GE          G  +TLS+ S   +EEV +      +FQLY
Sbjct:    3 ISSSTDYREAARRRLPPFLFHYIDGGAYSEHTMRRNIDDLADLALRQRVLKSVGTVDISTTLFDEELAMPVVLAPVGLTGMYARRGEVQAARAAEKKGIPLTLSTVSVCPIEEVQAASNRPIWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_SALNS (L-lactate dehydrogenase [cytochrome] OS=Salmonella newport (strain SL254) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S++  R R+L ++S + + T +    +SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA T     +FQLY
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETPLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +Y A A+ KLP  +F Y   GA  ++TL+ N    S I  R R+L ++S++ + T +    ++MP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLY 129          
The following BLAST results are available for this feature:
BLAST of CK933935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
LLDD_ACIBS5.477e-1233.07L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBC5.477e-1233.07L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIB55.477e-1233.07L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIB35.477e-1233.07L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ERWCT7.154e-1233.61L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_ECO277.154e-1233.07L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_SALCH9.343e-1232.28L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_AGRVS9.343e-1229.92L-lactate dehydrogenase [cytochrome] OS=Agrobacter... [more]
LLDD_SALNS1.220e-1132.28L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_PSEAE1.594e-1132.79L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_E01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933935 ID=CK933935; Name=CK933935; organism=Citrus sinensis; type=EST; length=792bp
GGGGATTTATTTATTTATTTAAAAATTTGATAACAAGAGGGATAATGATA
ATGAAGAAGAAAAATTATGAAACACACACACCATATGCAGATGATAGCCA
CCCATTTTCCCTGATAAGATTTGTTCTCAATTTCTCACCTCCAAATGCTC
ATCCACTCAACTTGCATTTTCTTGTTTAATTTTTTTTTCTTGTCTTATAA
TTCAATCAGGCCCCTTGTTTTGTCTCCATGAAAACTTATATCTATTTTAT
TTTCTCTTTGCTTTCTATTTCTTAAATCTCCCTCTATAACTCAGTCTTTG
TTCATCATCGTCTTCTCTCCACTGGTTTCTCTGAATGCACTTTGCTGCAC
AGTCTTTGTAAACCTTAGATTAATTTAAGTAGAAAACAGTCAACTGTCAA
GATGGGGGAGATCACAAATGTGATGGAGTATGAGGCCATTGCCAAGGAAA
AGTTGCCAAAGATGGTGTTTGATTACTATGCTTCAGGTGCAGAGGACCAG
TGGACTTTGCAAGAGAACAGGAATGCTTTCTCAAGAATCCTGTTTCGACC
TCGCATTCTGATTGATGTAAGCAAAATAGACATGAGTACCACTGTCTTGG
GCTTCAAGATATCGATGCCAATCATGATTGCCCCAACAGCCATGCAGAAG
ATGGCTCATCCTGAAGGGGAGTATGCTACAGCTAGAGCTGCATCGGCTGC
TGGAACGATTATGACATTGTCTTCGTGGTCTACTTCTAGCGTTGAAGAGG
TTGCTTCAACAGGACCTGGCATCCGCTTTTTCCAGCTCTATG
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