CK933935

Overview
NameCK933935
Unique NameCK933935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933935_ssr72 microsatellite CK933935_ssr72:72..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933935_ssr5 microsatellite CK933935_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1642 contig Csv1_Contig1642:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_STRM5 (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain R551-3) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +Y A A+ +LP  +F Y   GA  + TL+ N +  S I  R R+L ++S + + T + G  ++MP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYAEHTLKRNVSDLSDIALRQRVLRNMSDLSLETELFGETLAMPVALAPVGLTGMYARRGEVQAARAADSRGIPFTLSTVSVCPIEEVAPAIQRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 40/122 (32.79%), Postives = 62/122 (50.82%), Query Frame = 3 
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +Y A A+ KLP  +F Y   GA  + TL+ N +  + I  R R+L ++S++ +ST +    +SMP+ +AP  +  M    GE          G   T+S+ S   +EEVA       +FQLY
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLNNMSELSLSTRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_HAEIN (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae GN=lldD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y   A+ ++P  +F Y   G+  + TL  N +    I  R R+L D+S++D S  + G K+SMP ++AP     M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISSASDYREAARRRVPPFMFHYADGGSYAEQTLARNVSDLENIALRQRVLKDMSELDTSIELFGEKLSMPTILAPVGACGMYARRGEVQAAQAADNKGVPFTLSTVSICPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_HAEIG (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae (strain PittGG) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y   A+ ++P  +F Y   G+  + TL  N +    I  R R+L D+S++D S  + G K+SMP ++AP     M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISSASDYREAARRRVPPFMFHYADGGSYAEQTLARNVSDLENIALRQRVLKDMSELDTSIELFGEKLSMPTILAPVGACGMYARRGEVQAAQAADNKGVPFTLSTVSICPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_HAEIE (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae (strain PittEE) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y   A+ ++P  +F Y   G+  + TL  N +    I  R R+L D+S++D S  + G K+SMP ++AP     M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISSASDYREAARRRVPPFMFHYADGGSYAEQTLARNVSDLENIALRQRVLKDMSELDTSIELFGEKLSMPTILAPVGACGMYARRGEVQAAQAADNKGVPFTLSTVSICPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_HAEI8 (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae (strain 86-028NP) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y   A+ ++P  +F Y   G+  + TL  N +    I  R R+L D+S++D S  + G K+SMP ++AP     M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISSASDYREAARRRVPPFMFHYADGGSYAEQTLARNVSDLENIALRQRVLKDMSELDTSIELFGEKLSMPTILAPVGACGMYARRGEVQAAQAADNKGVPFTLSTVSICPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +Y A A+ KLP  +F Y   GA ++ TL+ N    + I  R R+L ++S++ + T + G   +MP+++ P  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +Y A A+ KLP  +F Y   GA ++ TL+ N    + I  R R+L ++S++ + T + G   +MP+++ P  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_YERPP (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis (strain Pestoides F) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +Y A A+ KLP  +F Y   GA ++ TL+ N    + I  R R+L ++S++ + T + G   +MP+++ P  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_YERPN (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +Y A A+ KLP  +F Y   GA ++ TL+ N    + I  R R+L ++S++ + T + G   +MP+++ P  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLY 129
The following BLAST results are available for this feature:
BLAST of CK933935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
LLDD_STRM53.550e-1132.79L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_PSEPG3.550e-1132.79L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_HAEIN3.550e-1132.28L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_HAEIG3.550e-1132.28L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_HAEIE3.550e-1132.28L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_HAEI83.550e-1132.28L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_YERPY4.637e-1131.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPS4.637e-1131.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPP4.637e-1131.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPN4.637e-1131.97L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_E01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933935 ID=CK933935; Name=CK933935; organism=Citrus sinensis; type=EST; length=792bp
GGGGATTTATTTATTTATTTAAAAATTTGATAACAAGAGGGATAATGATA
ATGAAGAAGAAAAATTATGAAACACACACACCATATGCAGATGATAGCCA
CCCATTTTCCCTGATAAGATTTGTTCTCAATTTCTCACCTCCAAATGCTC
ATCCACTCAACTTGCATTTTCTTGTTTAATTTTTTTTTCTTGTCTTATAA
TTCAATCAGGCCCCTTGTTTTGTCTCCATGAAAACTTATATCTATTTTAT
TTTCTCTTTGCTTTCTATTTCTTAAATCTCCCTCTATAACTCAGTCTTTG
TTCATCATCGTCTTCTCTCCACTGGTTTCTCTGAATGCACTTTGCTGCAC
AGTCTTTGTAAACCTTAGATTAATTTAAGTAGAAAACAGTCAACTGTCAA
GATGGGGGAGATCACAAATGTGATGGAGTATGAGGCCATTGCCAAGGAAA
AGTTGCCAAAGATGGTGTTTGATTACTATGCTTCAGGTGCAGAGGACCAG
TGGACTTTGCAAGAGAACAGGAATGCTTTCTCAAGAATCCTGTTTCGACC
TCGCATTCTGATTGATGTAAGCAAAATAGACATGAGTACCACTGTCTTGG
GCTTCAAGATATCGATGCCAATCATGATTGCCCCAACAGCCATGCAGAAG
ATGGCTCATCCTGAAGGGGAGTATGCTACAGCTAGAGCTGCATCGGCTGC
TGGAACGATTATGACATTGTCTTCGTGGTCTACTTCTAGCGTTGAAGAGG
TTGCTTCAACAGGACCTGGCATCCGCTTTTTCCAGCTCTATG
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