CK933942

Overview
NameCK933942
Unique NameCK933942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13188 contig Csv1_Contig13188:1..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933942 vs. ExPASy Swiss-Prot
Match: V033_FOWPV (Soluble NSF attachment protein homolog FPV033 OS=Fowlpox virus GN=SNAP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.951e-20
Identity = 55/185 (29.73%), Postives = 102/185 (55.14%), Query Frame = 1
Query:  256 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKH-----EAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD 792
            ++  +L  ++A  FK  K+W+ AG +++K A     L+S+      + A  +V+A++ Y+K    ++I CL QA+ ++  I   + AA++   +AE+YES   ++E+  + +E A + ++ E    SAN C  KVA     ++Q+ K+  +YE+I    +   +LK+ +K   L A +C  C GD
Sbjct:   35 KEVGNLLIRSAILFKAVKNWELAGYSFLKAA----VLQSQESDFVLDTAINFVNASNMYRKIDPKKSIECLLQAIEVYKSINNFTTAAKHQMTVAEIYESCIMDLEKACMHYEYATEYYREEGSIKSANDCMIKVADCFTRMKQFDKAASVYEQIGIICMRLPILKHRIKDQFLKAILCHFCIGD 215          
BLAST of CK933942 vs. ExPASy Swiss-Prot
Match: SEC17_ASHGO (Vesicular-fusion protein SEC17 OS=Ashbya gossypii GN=SEC17 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.951e-20
Identity = 55/191 (28.80%), Postives = 100/191 (52.36%), Query Frame = 1
Query:  250 KCEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE 819
            + E+A+DL+ +AAN ++L+K    AG T+ K A C ++  ++ EA   +V+A  CYK  +   A   LE+A+ +F   G+    A +  E+AE+ E++  +  +    +E A D +  ++    +N+   K A   A  E+Y  + E+Y +I   S+ N L ++ ++ + L   +C L   D VA    L+
Sbjct:   32 RLEEASDLYVEAANLYRLSKELSAAGDTFWKAAECQVEAGNEDEAGNTFVEAYKCYKGANPERACEALERAIAIFTRKGQFRRGAYFKFELAEVQETDLQDYGRARENYELAGDWYMQDQALALSNKAYIKCADLNALDEKYLAAAELYRKIISNSVGNRLSQWSLRDYYLKLCLCFLAASDTVAAEKTLQ 222          
The following BLAST results are available for this feature:
BLAST of CK933942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
V033_FOWPV9.951e-2029.73Soluble NSF attachment protein homolog FPV033 OS=F... [more]
SEC17_ASHGO9.951e-2028.80Vesicular-fusion protein SEC17 OS=Ashbya gossypii ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933942 ID=CK933942; Name=CK933942; organism=Citrus sinensis; type=EST; length=821bp
GGGGGCACTCTTGAGAATTCTTTTCCTCTTTACTTTTCCTTTCTTAGCAA
ATACCTAACCTCTGACACTACCAATTCCCCTTTTTTTCCCGATTGTTTTA
TTTTCTTCTAGTTCTTGCTCCGATTAATTCATTTCTCCGCCTATAATAAA
ATAAAATACTAAAAGAAAATGGGCGATCAGATTGCTCGAGCCGAGGAATT
CGAGAAAAAAGCGGAGAAAAAGCTTAATGGTTGGGGTTTATTCGGCTCCA
AGTGCGAAGACGCCGCCGATCTCTTCGATAAAGCCGCCAATTCCTTCAAG
CTCGCCAAATCATGGGATAAAGCTGGAGCAACTTATGTTAAGTTGGCAAA
CTGTCATTTAAAGTTGGAAAGCAAACATGAAGCTGCTCAAGCTTATGTTG
ATGCTGCCCACTGCTATAAGAAAACATCTTCAAATGAGGCCATATCTTGC
TTAGAACAGGCTGTAAATATGTTTTGTGACATTGGAAGGCTCAGTATGGC
TGCAAGATATTATAAGGAAATTGCTGAGCTGTATGAATCTGAGCACAACA
TTGAACAGACTATTGTTTTCTTTGAGAAGGCAGCTGATATGTTCCAAAAT
GAAGAAGTAACAACTTCTGCTAACCAGTGCAAGCAGAAAGTTGCACAATA
TGCTGCTGAATTGGAACAATATCACAAGTCAATTGAGATTTATGAAGAGA
TTGCTAGGCAGTCTCTCAACAACAACTTGTTGAAATATGGAGTGAAAGGA
CATCTTCTTAATGCTGGCATATGCCAACTTTGCAAGGGTGATGTTGTTGC
AATTACCAACGCATTGGAGCG
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