CK933949

Overview
NameCK933949
Unique NameCK933949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933949_ssr745 microsatellite CK933949_ssr745:745..756. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: DRL20_ARATH (Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 62/246 (25.20%), Postives = 108/246 (43.90%), Query Frame = 1
Query:   94 KKIFLVLDDVWD----GDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQ---RILDSEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVS 810
            K   L LDD+W+     +    DP          G K+  TTR++ +   MG      + ++ L E   +  F++         D   +  + R +A+KC GLPLA  VIG  +  K T++EW+    +L+S   +   +   +L  L  SY++L     VK    YCA++P+D  + KE+LI  W+ +   +              + I+        + + +D D      MHD+V + A +++
Sbjct:  254 KSFVLFLDDIWEKVDLAEIGVPDP------RTKKGRKLAFTTRSQEVCARMGVEHP--MEVQCLEENVAFDLFQKKVGQTTLGSD-PGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRHAIHVLNSYAAEFIGMEDKVLPLLKYSYDNL-KGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIIDGSEGIEKAEDKG--YEIIGCLVRASLLMEWDDGDGRRAVCMHDVVREMALWIA 487          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: R1A3_SOLDE (Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 56/264 (21.21%), Postives = 114/264 (43.18%), Query Frame = 1
Query:   10 EGLGESKEASGLSEFQSLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQ 801
            + +G+   +  L +   L   + +++  ++  +++DDVWD  +  WD    C  +  + S+I++TTR+  +A+   +  SD + +    E+E W   ++  F  +       L+ +G +IA+ C  LPL+   +        T+ E ++  + E W  E++   L  P L S                   F +D  +D   LI LW+++ +  +            Y   L  R+     ++ + D     C++HD++ DF +
Sbjct:   97 DAIGDESGSRELPD-NELADMLRKTLLPRRYLILVDDVWDNSA--WDDLRGCFPDVNNRSRIILTTRHHEVAKY-ASVHSDPLHLRMFYEDESWKLLEKKVFGEQSCSPL--LKDVGLRIAKLCGKLPLSIVFVAG------TLSEMEK--EVECW--EQMANNLGGPKLSS-------------------FLEDRVIDISRLIRLWISESFIKSSEGRSLEDIAEGYLENLIGRNLVMVTQRADSDGMVKACRLHDVLLDFCK 325          
The following BLAST results are available for this feature:
BLAST of CK933949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
DRL20_ARATH1.519e-1225.20Probable disease resistance protein At1g63360 OS=A... [more]
R1A3_SOLDE1.984e-1221.21Putative late blight resistance protein homolog R1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_C02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933949 ID=CK933949; Name=CK933949; organism=Citrus sinensis; type=EST; length=814bp
GGGATCATTGAAGGTCTAGGCGAGTCAAAAGAAGCTTCTGGTTTAAGCGA
ATTCCAATCTCTTATGAGCCATATCCATAGATCAATTGGAGGAAAAAAAA
TTTTTCTTGTCTTAGATGATGTATGGGATGGGGATTCCAATAAATGGGAT
CCATTCTTCTTTTGTCTAAAGAATGGTCTCCACGGAAGTAAAATTTTGGT
AACCACACGTAATGAGTCAATTGCACGTATGATGGGAACAACAGAGTCAG
ATACTATCTCCATTGAACAACTGGCTGAAGAGGAATGCTGGTTGTTTTTC
AAGCAGTTAGCATTTTTCGGTCGCTGTTTCGAGGATTGTGAAAGATTAGA
ACCAATCGGGCGAAAAATTGCACGCAAGTGCAAAGGCCTGCCTCTTGCTG
CAAAGGTAATAGGGAATCTCTTGCGCTCTAAAATTACAGTAAAAGAGTGG
CAAAGAATTTTAGATAGTGAAATGTGGAAATTAGAAGAGATTGGGCAAGG
TCTTTTGGCTCCTTTGTTGTTGAGTTATAACGATTTGCCCTCCAATTCTA
TGGTAAAACGGTGCTTCTCATATTGTGCTGTCTTTCCAAAAGACTACAGT
ATGGATAAAGAAGAATTGATTAGTCTGTGGATGGCTCAAGGTTACTTTAA
CGCAGAAGAAGACGAAGAAATGGAGATGATTGGAGAAGAGTATTTCAACA
TCTTGGCAACACGCTCTTTCTTTCAAGAGATTGAAAAAGATGAGGATGAT
GATGATTTTATGAGGTGTAAGATGCATGACATAGTACATGATTTTGCCCA
ATTTGTAAGTAGAA
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