CK933955

Overview
NameCK933955
Unique NameCK933955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933955_ssr5 microsatellite CK933955_ssr5:5..26. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933955_ssr27 microsatellite CK933955_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933955_ssr26 microsatellite CK933955_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.803e-65
Identity = 115/152 (75.66%), Postives = 128/152 (84.21%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +EGV GT+ F Q  DGPTTV+G +SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDD RHA              +F+++D+QIPL+GPNSI+GRAVVVHADPDDLGKGGHELSK+TGNAGGRVACG+IGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQG 152
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 7.579e-65
Identity = 117/152 (76.97%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +EGV GT+ F Q+GD PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.688e-64
Identity = 116/152 (76.32%), Postives = 128/152 (84.21%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +EGV GT+ F Q+G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGR+ACGIIGLQG
Sbjct:    1 MVKAVAVLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.205e-64
Identity = 115/152 (75.66%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +E V GT+ F+Q+GD PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+NRHA            TA+FT+ D QIPL+GP SIIGR VVVHADPDDLGKGGHEL+K+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 2.205e-64
Identity = 117/152 (76.97%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +EGVKGT+ F+QEGDGPT+V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHGAP+D+NRHA             A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 2.205e-64
Identity = 118/152 (77.63%), Postives = 129/152 (84.87%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL GT+ VKGT+ F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHGAPED++RHA                 + D+QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLAGTD-VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 151
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 8.380e-64
Identity = 117/152 (76.97%), Postives = 125/152 (82.24%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            M K VAVL  +EGV GT+ F QEGDG TTVSG++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HGAPED NRHA            TATFT+ D QIPL+GPNSI+GRAVVVHADPDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:    1 MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.429e-63
Identity = 115/152 (75.66%), Postives = 128/152 (84.21%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVLG +EGV GT+ F QEG+GPTTV+GSL+GLKPG HGFHVHALGDTTNGC+STG HFNP   EHGAPED+NRHA            T +F++ D+QIPL+GPNSIIGRAVVVHAD DDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.867e-63
Identity = 112/152 (73.68%), Postives = 124/152 (81.58%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            ++KAV VL G   VKG V F QEGDGPTTV+G +SGL PG HGFHVHALGDTTNGCMSTGPHFNP GKEHGAP DDNRHA            T  F++ D+QIPLSGP+SI+GRAVVVHADPDDLGKGGHELSKSTGNAGGR+ACG++GLQG
Sbjct:    3 LLKAVVVLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG 154
[Close]
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.867e-63
Identity = 116/152 (76.32%), Postives = 126/152 (82.89%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +EGV GT  F Q G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGR+ACGIIGLQG
Sbjct:    1 MVKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152
The following BLAST results are available for this feature:
BLAST of CK933955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_CARPA5.803e-6575.66Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_NICPL7.579e-6576.97Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC2_SOLLC1.688e-6476.32Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_CAPAN2.205e-6475.66Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC2_ORYSJ2.205e-6476.97Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC2_MAIZE2.205e-6477.63Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_ARATH8.380e-6476.97Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_SOYBN1.429e-6375.66Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_PINSY1.867e-6373.68Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC1_SOLLC1.867e-6376.32Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933955 ID=CK933955; Name=CK933955; organism=Citrus sinensis; type=EST; length=810bp
GGGGACACACACACACACACACACACTCTCTCTCTCTCTCACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTACATTTTCATTTAGT
TTATCCTCAGCTTTTGCTTAGTGTTTAACTTGCAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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