CK933955

Overview
NameCK933955
Unique NameCK933955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.541e-36
Identity = 78/152 (51.32%), Postives = 94/152 (61.84%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVAVL G   + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHGAPED+NRH              A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.318e-36
Identity = 79/152 (51.97%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVAVL G   V GTV+F Q+ + GP TV+  + G  P    GFHVH  GD TNGC S GPHFNP  K HG P D  RH              A   + D+ + L+G NSI+GR VV+H   DDLGKGGH  S  TGNAG R ACG+IGL
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQDSESGPVTVTYDIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGGHADSLKTGNAGPRPACGVIGL 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.261e-35
Identity = 79/152 (51.97%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MV+AVAVL G  GV G V F Q  +  PTTVS  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HGAP D+ RH              A  +  D+ I L GP S++GR+VV+HA  DDLGKG  E S  TGNAG R ACG+IGL
Sbjct:    1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.261e-35
Identity = 79/152 (51.97%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGD-GPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVAV+ G   V G+V F QE + GPTT++  ++G       G H+H  GD TNGC S GPHFNP GK HG   D+NRH              +  TV DN I L GP S+IGR VVVHA  DDLGKG  E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVVRGDSKVSGSVVFEQETENGPTTITWDITGHDANAKRGMHIHTFGDNTNGCTSAGPHFNPHGKTHGNRTDENRHVGDLGNIETDAQGNSKGTVTDNLIKLIGPESVIGRTVVVHAGTDDLGKGDTEESLKTGNAGARPACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.647e-35
Identity = 78/152 (51.32%), Postives = 96/152 (63.16%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVA + G   + GTV+F Q E + PTT++ +++G       G HVH  GD TNGC S GPHFNP G+ HGAP D+ RH              AT +V D+ I L GP S+IGR VVVH+  DDLGKG +E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVATVRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGKGENEESKKTGNAGTRPACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.809e-35
Identity = 78/152 (51.32%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGP-TTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVAVL G   V GTV+F Q  +   TTVS +++G  P    GFH+H  GD TNGC S GPHFNP GK HGAPED+ RH              +  +  D  I L G  S++GR +VVHA  DDLG+G  E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQADENSNTTVSWNITGNDPNAERGFHIHQFGDNTNGCTSAGPHFNPFGKTHGAPEDEVRHVGDLGNFKTDAEGNSKGSKTDKLIKLIGAESVLGRTLVVHAGTDDLGRGDSEESKKTGNAGARPACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 77/152 (50.66%), Postives = 94/152 (61.84%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVAVL G   + GTV+F Q  +  PTTVS +++G  P    G H+H  GD TNGC S GPH+NP  K HGAP D+ RH              A  +V D  I + G  SI+GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQANESAPTTVSWNITGHDPNAERGMHIHQFGDNTNGCTSAGPHYNPFKKTHGAPTDEVRHVGDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 73/150 (48.67%), Postives = 91/150 (60.67%), Query Frame = 2
Query:  116 VKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +KAV VL G   V G + F Q+ +G P  + G + GL  G HGFHVH  GD T GC + G HFNP  K+HG P+D+ RH              A   + D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 LKAVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 74/150 (49.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKSTGNAGGRVACGII 556
            +AVAVL G  GV GTV F+Q+ +  P  + G + GL PG HGFHVH  GD+TNGC S GPHFNP  K HG P+DD RH              A F + D+ + + G ++++GR++VVHA  DDLGKG     E S  TGN G RVACG+I
Sbjct:    4 RAVAVLRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVACGVI 153          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.258e-35
Identity = 77/152 (50.66%), Postives = 95/152 (62.50%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVAV G ++ + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHGAPED+NRH              A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVRGDSK-ISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 151          
The following BLAST results are available for this feature:
BLAST of CK933955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_ASPOR2.541e-3651.32Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_YARLI3.318e-3651.97Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC_YEAST1.261e-3551.97Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_PODAN1.261e-3551.97Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC_BOTFU1.647e-3551.32Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]
SODC_EMENI2.809e-3551.32Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
SODC_HUMLT3.669e-3550.66Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]
SODC_HORSE3.669e-3548.67Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_HAECO3.669e-3549.33Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODC_ASPFL6.258e-3550.66Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933955 ID=CK933955; Name=CK933955; organism=Citrus sinensis; type=EST; length=810bp
GGGGACACACACACACACACACACACTCTCTCTCTCTCTCACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTACATTTTCATTTAGT
TTATCCTCAGCTTTTGCTTAGTGTTTAACTTGCAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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