CK933955

Overview
NameCK933955
Unique NameCK933955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933955_ssr5 microsatellite CK933955_ssr5:5..26. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933955_ssr27 microsatellite CK933955_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933955_ssr26 microsatellite CK933955_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.438e-63
Identity = 113/152 (74.34%), Postives = 128/152 (84.21%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +  V GT++F+QEG+GPTTV+G+L+GLKPG HGFH+HALGDTTNGC+STGPHFNP GKEHGAPED+ RHA            T +FT+ DN IPL+G NSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.184e-63
Identity = 114/152 (75.00%), Postives = 125/152 (82.24%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            M K VAVL  +EGVKGT+ F  EG+G TTV+G++SGL+PG HGFHVHALGD TNGCMSTGPHFNP GK HGAPED NRHA            TATFT+ D+QIPLSGPNSI+GRA+VVHADPDDLGKGGHELS STGNAGGRVACGIIGLQG
Sbjct:    1 MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 4.159e-63
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +EGV GT+ F+QE +G PTTV+G LSGLKPGPHGFHVHALGDTTNGCMSTGPH+NP GK+HGAP+D++RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 153          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 9.265e-63
Identity = 114/152 (75.00%), Postives = 125/152 (82.24%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            M K V VL  +EGVKGT+ F QEG+G TTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HGAPED NRHA            TATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 2.064e-62
Identity = 116/152 (76.32%), Postives = 126/152 (82.89%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            M K VAVL  +EGVKGT+ FAQEG+G TTV+G++SGLKPG HGFHVHALGDTTNG MSTGPHFNP GK+HGAPED NRHA            TATFT+ D QIPLSGPNSI+GRAVVVHADPD LGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.747e-61
Identity = 113/152 (74.34%), Postives = 121/152 (79.61%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAV VL G+ GV G + F QE DGPTTV+G LSGL PG HGFHVHALGDTTNGC+STGPH+NPA KEHGAPED+ RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGR+ACG IGLQG
Sbjct:    1 MVKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.027e-53
Identity = 97/148 (65.54%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAVAVL GT  V+G V+  QE DGPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP G  HGAPED+NRHA             A  T+VDNQIPL+GPN+++GRA VVH   DDLGKGGHELS STGNAGGR+ACG++GL
Sbjct:   70 KAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGL 217          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.483e-52
Identity = 97/148 (65.54%), Postives = 112/148 (75.68%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAVAVL GT  V+G V+  QE DGPTTV+  +SGL PG HGFH+H  GDTTNGCMSTGPHFNP  K HGAPED+ RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   72 KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.255e-51
Identity = 97/148 (65.54%), Postives = 111/148 (75.00%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAVAVL GT  V+G V+ +QE DGPTTVS  ++GL PG HGFH+H  GDTTNGCMSTG HFNP G  HGAPEDD RHA             A  T+VD QIPLSGPN++IGRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   62 KAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 209          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.796e-51
Identity = 98/165 (59.39%), Postives = 114/165 (69.09%), Query Frame = 2
Query:   68 FIFLPPRGVLRSHSTMVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            F    P   L   S   KAVAVL GT  V+G V+  Q+  GPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VDNQIPL+GPNS++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG+IGL
Sbjct:   49 FAVKAPSKALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213          
The following BLAST results are available for this feature:
BLAST of CK933955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_PEA2.438e-6374.34Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_BRAOC3.184e-6375.00Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_SOLCS4.159e-6375.82Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC1_BRAJU9.265e-6375.00Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC2_BRAJU2.064e-6276.32Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_PANGI1.747e-6174.34Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODCP_SOLCS1.027e-5365.54Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL1.483e-5265.54Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_VITVI1.255e-5165.54Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_ARATH2.796e-5159.39Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933955 ID=CK933955; Name=CK933955; organism=Citrus sinensis; type=EST; length=810bp
GGGGACACACACACACACACACACACTCTCTCTCTCTCTCACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTACATTTTCATTTAGT
TTATCCTCAGCTTTTGCTTAGTGTTTAACTTGCAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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