CK933955

Overview
NameCK933955
Unique NameCK933955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933955_ssr5 microsatellite CK933955_ssr5:5..26. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933955_ssr27 microsatellite CK933955_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933955_ssr26 microsatellite CK933955_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.898e-38
Identity = 80/152 (52.63%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVAVL G   V G ++F QE +G P TVSG +  L      GFHVH  GD TNGC S GPHFNP GK HGAP D  RH              A+  + D  + L GP SIIGR +VVHA  DD GKGG+  S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 1.031e-37
Identity = 76/150 (50.67%), Postives = 96/150 (64.00%), Query Frame = 2
Query:  116 VKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +KAV VL G   V+G ++F Q E +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.759e-37
Identity = 76/150 (50.67%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  116 VKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +KAV VL G   V+G + F Q+  G P  VSG ++GL  G HGFHVH  GD T GC + GPHFNP  K+HG P D+ RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.759e-37
Identity = 81/152 (53.29%), Postives = 95/152 (62.50%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAVAVL G   + GTV+F Q + + PTTVS ++ G  P    GFHVH  GD TNGC S GPHFNP GK HGAPED  RH              A  +  D  I L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 2.298e-37
Identity = 77/148 (52.03%), Postives = 93/148 (62.84%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG  +ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 3.001e-37
Identity = 76/148 (51.35%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAV VL G   V+GT+ F  +G     V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNA  R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGH-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.001e-37
Identity = 78/148 (52.70%), Postives = 95/148 (64.19%), Query Frame = 2
Query:  122 AVAVLGGTEGVKGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            AV V+ G E V G V F QE  D P TV+  ++GL+ G HGFHVHA GDTTNGC+S GPHFNP GK HGAP D++RH                 T+ D  I L G ++I+GR +VVHAD DDLGKGG   S +TG AG R+ CG+IG+
Sbjct:    5 AVCVIKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIGV 151          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 155.606 bits (392), Expect = 3.001e-37
Identity = 82/152 (53.95%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            M KAVAVL G   V G V+F Q  +  PTT++  +SG       GFHVH  GD TNGC S GPHFNP  KEHGAPEDDNRH              A  +  D  + L G NSI+GR VV+HA  DDLGKGG+  SK TGNAG R ACG+IGL
Sbjct:    1 MAKAVAVLRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.920e-37
Identity = 79/152 (51.97%), Postives = 95/152 (62.50%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAV VL G   V GTV+F QE +  PTT++  ++G  P    GFH+H  GD TNGC S GPHFNP GK HGAP D  RH              A  +V D+ + L GP+S++GR VVVH   DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVLRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.119e-37
Identity = 77/152 (50.66%), Postives = 95/152 (62.50%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGS-LSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 565
            ++KAV VL G     GTV F QEG+      G  L GL PG HGFHVH  GD TNGC+S GPHFNPA K+H  P+D++RH              A   + D +I L+GP SIIGR +V+H   DDLG+GG+E S  TGNAG R+ACG+IG +
Sbjct:    2 VLKAVCVLRGAGETTGTVYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIGTE 152          
The following BLAST results are available for this feature:
BLAST of CK933955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_CRYGA7.898e-3852.63Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_HYLLA1.031e-3750.67Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_RAT1.759e-3750.67Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_ASPFU1.759e-3753.29Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_CAPHI2.298e-3752.03Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CEREL3.001e-3751.35Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC1_DICDI3.001e-3752.70Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC1_DEBHA3.001e-3753.95Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_CORMI3.920e-3751.97Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_XIPGL5.119e-3750.66Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933955 ID=CK933955; Name=CK933955; organism=Citrus sinensis; type=EST; length=810bp
GGGGACACACACACACACACACACACTCTCTCTCTCTCTCACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTACATTTTCATTTAGT
TTATCCTCAGCTTTTGCTTAGTGTTTAACTTGCAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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