CK933958

Overview
NameCK933958
Unique NameCK933958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 8.068e-94
Identity = 153/221 (69.23%), Postives = 185/221 (83.71%), Query Frame = 3
Query:  144 DPELVVEEVHKSINAS------RRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            DP++V +EV K +  S      RR LGF SCGTGNPIDDCWRCD  W +NR++LADC IGFG+ AIGG+DG+ Y+VTD  D+D VNPKPGTLR+AVIQ+EPLWI+F RDMVI LK+ELIMNSFKTID RG++VHIA G CITIQ++TN+IIHG++IHDCK  GNA VR SPSH+GWRT++DGD VSIFG SH+W+DH SLS+C DGL+DA+ GSTAIT+SN
Sbjct:   88 DPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSN 308          

HSP 2 Score: 25.0238 bits (53), Expect = 8.068e-94
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            N+ THHN+VMLL
Sbjct:  309 NHFTHHNEVMLL 320          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 6.771e-93
Identity = 150/217 (69.12%), Postives = 182/217 (83.87%), Query Frame = 3
Query:  138 VQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            V D  L + E+    +  RR LG+ +CGTGNPIDDCWRCDP W +NR++LADC IGFG+ AIGG+DG+ YVVTD  DD+PVNP+PGTLR+AVIQD PLWI+F RDMVI LK+ELI+NSFKTIDGRGA+VHIA G CITIQ+VTN+I+HG++IHDCK  GNA VR S +H+GWRT++DGD +SIFG SHVW+DH SLS+C DGL+DA+ GSTAITISN
Sbjct:   51 VADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISN 267          

HSP 2 Score: 25.7942 bits (55), Expect = 6.771e-93
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            N++THHN+VMLL
Sbjct:  268 NHLTHHNEVMLL 279          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 1.513e-86
Identity = 149/227 (65.64%), Postives = 173/227 (76.21%), Query Frame = 3
Query:  135 PVQDPELVVEEVHKSINAS--RRNL-------GFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            P  DPELV  +V   +NAS  RR         G   C TGNPIDDCW+CDP W  NRQ LADC IGFG+ A+GGK G+ Y VTDS DDD VNPKPGTLRY VIQ+EPLWI+F  +M+I LK+ELI NS+KT+DGRGA+VHI GG CIT+QYV+NIIIH I+IH C + GN NVR SP+HYG+RT SDGDG+SIFG   +W+DHCSLS C DGLIDA+ GST ITISN
Sbjct:   34 PHPDPELVAYQVQWKVNASITRRQALDTTDQAGSTPCITGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGQFYFVTDSSDDDAVNPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSLSRCKDGLIDAVMGSTGITISN 260          

HSP 2 Score: 23.8682 bits (50), Expect = 1.513e-86
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            N+ +HHN+VMLL
Sbjct:  261 NFFSHHNEVMLL 272          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.575e-86
Identity = 148/228 (64.91%), Postives = 175/228 (76.75%), Query Frame = 3
Query:  123 ISSSPVQDPELVVEEVHKSINAS------RRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            ++   V DP+ V  EV   I+ S      RR LGF SCG GN IDDCWRCD  W +NR+ LADC +GFG +A GG++G  YVVTD  DDD VNPKPGTLR+AVIQ EPLWIIF RDMVI LK+ELIMNSFKTID RGA+VHIA G CITIQ +TN+I+HG++IHDCKR GN  VR SPS  G+R  +DGD ++IFG SH+W+DH SLSNC DGL+D ++GSTAITISN
Sbjct:   63 LNEHAVTDPDKVAHEVSNLIHMSEQNITARRKLGFFSCGNGNLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDDDVVNPKPGTLRHAVIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQNITNVIVHGLHIHDCKRTGNVTVRSSPSQAGFRGTADGDAINIFGSSHIWIDHNSLSNCTDGLVDVVNGSTAITISN 290          

HSP 2 Score: 23.0978 bits (48), Expect = 2.575e-86
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            N+ THH++VMLL
Sbjct:  291 NHFTHHDEVMLL 302          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 3.365e-74
Identity = 127/187 (67.91%), Postives = 149/187 (79.68%), Query Frame = 3
Query:  228 NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            NPID CWR +P W  NR+ LADCA+GFGK A+GGK G IYVVT+  DD P NP+PGTLRYAVIQ +PLWI FARDMVI L+ ELIMNS+KTIDGRGA V IA GPCITIQ+V+++IIHGI+IHDCK G +  VR SP+H G R  SDGD ++IF  SH+W+DHC  S C DGLID +H STA+TISN
Sbjct:   37 NPIDSCWRRNPYWASNRRALADCAVGFGKSAVGGKYGSIYVVTNPSDD-PENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFDSSHIWIDHCFFSRCQDGLIDVLHASTAVTISN 222          

HSP 2 Score: 23.483 bits (49), Expect = 3.365e-74
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            NY T H+KVMLL
Sbjct:  223 NYFTQHDKVMLL 234          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.568e-71
Identity = 124/205 (60.49%), Postives = 155/205 (75.61%), Query Frame = 3
Query:  177 SINASRRNLGFLSCGTGNPIDDCWRC-DPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            S ++S  +    SC TGNPIDDCWRC D  W  NRQ+LADC+IGFG   +GGK+GKIYVVTDS D++P NP PGTLRY VIQ+EPLWI+F+ +M+I LK+ELI+NS+KT+DGRG++VHI G  C+T+QYV +IIIH ++I+DCK       R           SDGDG+SIFG   +WVDHCS+S+C DGLIDA+ GSTAITISN
Sbjct:   62 SSSSSSSSSSSSSCRTGNPIDDCWRCSDADWSTNRQRLADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGR---------SDGDGISIFGSQKIWVDHCSMSHCTDGLIDAVMGSTAITISN 257          

HSP 2 Score: 25.0238 bits (53), Expect = 2.568e-71
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            NY THH++VMLL
Sbjct:  258 NYFTHHDEVMLL 269          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.381e-69
Identity = 121/187 (64.71%), Postives = 145/187 (77.54%), Query Frame = 3
Query:  228 NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            NP+D CWR    W+ NR+ LADCA+GFG   +GGK G IYVVT+  D+   NP PG+LRY VIQ +PLWI FA+DMVITL  EL++NS+KTIDGRGA V IA GPCITIQ VTN+I+HGI+IHDCK G +  VR SP+H G R  SDGD ++IFG S+VW+DHC L++C DGLID IH STAITISN
Sbjct:   47 NPVDSCWRLKSDWDVNREDLADCAVGFGSSTLGGKKGNIYVVTNPYDNAQ-NPHPGSLRYGVIQAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKSGKVRSSPTHVGHRKGSDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISN 232          

HSP 2 Score: 23.483 bits (49), Expect = 1.381e-69
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            NY T H+KVMLL
Sbjct:  233 NYFTQHDKVMLL 244          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.387e-69
Identity = 126/206 (61.17%), Postives = 152/206 (73.79%), Query Frame = 3
Query:  183 NASRRNLGFLS----CGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            N++RR LG       C   NPID CWRCDP W +NR++LADCA+GFG +AIGGKDG+ YVVTD+ DD   +PKPGTLR+AVIQ EPLWIIF R M I L +E+IM S KTID RG +VHI  G  IT+QY+ N+IIHG++IHD   G    VRD+  H G RT SDGDG+SIFG S++W+DH S+  C DGLIDA+ GST ITISN
Sbjct:   81 NSTRRGLGTKKYTGPCMVTNPIDKCWRCDPNWADNRKKLADCAMGFGSKAIGGKDGEFYVVTDNSDDYN-DPKPGTLRHAVIQKEPLWIIFKRGMNIRLHQEMIMQSDKTIDARGVNVHITKGAGITLQYIKNVIIHGLHIHDIVEGNGGMVRDAVDHIGIRTKSDGDGISIFGASYIWIDHVSMQRCYDGLIDAVEGSTGITISN 285          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 7.407e-68
Identity = 117/187 (62.57%), Postives = 143/187 (76.47%), Query Frame = 3
Query:  228 NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            NP+D CWR    W  NR+ LADC +GFG   +GGK G +YVVT+  D+   NP+PG+LRY VIQ +PLWI FA+DMVITL+ EL++NS+KTIDGRGA V IA GPCITIQ VTN+I+HGI+IHDCK G    VR SP+H G R  SDGD ++IFG S++W+DHC L++C DGLID IH ST ITISN
Sbjct:   47 NPVDSCWRLKSDWAANRKDLADCVVGFGSSTLGGKKGNLYVVTNPYDNAQ-NPQPGSLRYGVIQAKPLWITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKYGMVRSSPTHVGHRKGSDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISN 232          

HSP 2 Score: 23.483 bits (49), Expect = 7.407e-68
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            NY T H+KVMLL
Sbjct:  233 NYFTQHDKVMLL 244          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.448e-66
Identity = 126/223 (56.50%), Postives = 154/223 (69.06%), Query Frame = 3
Query:  147 PELVVEEVHKSI------NASRRNLG---FLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            PE V    +K++      N++RRNL       C   NPID CWRC   W  NR+ L  C  GFG++  GG  G+IYVVTD  DD   +PK GTLR+ VIQD PLWIIF + MVI LK+ELI+N+ KTIDGRGA+V IAGG  +T+Q+V N+IIHGI+IHD K G    +RDS  H G RT SDGDG+SI G S++W+DH SL+ C+DGLID I GSTAITISN
Sbjct:   50 PEEVTNHFNKAVHSSFEGNSTRRNLRTNKLGQCLATNPIDRCWRCKKNWSANRKDLVKCVKGFGRKTTGGAAGEIYVVTDPSDDSLTDPKFGTLRWGVIQDRPLWIIFGKSMVIRLKQELIINNDKTIDGRGANVQIAGGAQLTVQFVHNVIIHGIHIHDIKPGEGGLIRDSEKHSGIRTRSDGDGISIIGSSNIWIDHVSLARCSDGLIDVILGSTAITISN 272          
The following BLAST results are available for this feature:
BLAST of CK933958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL15_ARATH8.068e-9469.23Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL1_ARATH6.771e-9369.12Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL12_ARATH1.513e-8665.64Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH2.575e-8664.91Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL2_ARATH3.365e-7467.91Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]
PEL13_ARATH2.568e-7160.49Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL17_ARATH1.381e-6964.71Putative pectate lyase 17 OS=Arabidopsis thaliana ... [more]
PEL59_SOLLC1.387e-6961.17Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL16_ARATH7.407e-6862.57Probable pectate lyase 16 OS=Arabidopsis thaliana ... [more]
PEL_LILLO2.448e-6656.50Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933958 ID=CK933958; Name=CK933958; organism=Citrus sinensis; type=EST; length=827bp
GGGGACTCCACTCTCCCCTTTACTTCATTTTCTTTCCTAGCAGAGAGAAA
GTGAGAGAGATTGAACAAATGGCAATTCCACTCTTGCTTTGGTTGCTCTT
GTGCCTTTTAGCTCCAACCTTCATTTCCTCTTCACCAGTTCAAGATCCTG
AATTAGTAGTGGAAGAAGTACACAAAAGCATCAATGCGTCTAGGAGGAAT
TTGGGGTTTCTGTCGTGTGGGACCGGCAATCCGATCGACGACTGCTGGCG
GTGTGACCCGAAGTGGGAAGAGAACCGGCAGCAGCTAGCGGATTGCGCCA
TCGGGTTCGGCAAGCAGGCCATTGGTGGGAAAGATGGTAAGATATATGTT
GTTACGGACTCCGGTGACGATGACCCAGTGAACCCAAAGCCAGGCACTCT
GAGGTATGCTGTGATCCAAGACGAGCCCCTATGGATCATTTTCGCACGTG
ACATGGTGATCACATTGAAAGAGGAGTTGATCATGAACTCGTTCAAGACC
ATCGACGGCCGAGGAGCGAGCGTACACATAGCCGGTGGTCCATGCATTAC
TATCCAGTACGTGACCAACATCATTATTCATGGGATTAATATACATGACT
GTAAGAGAGGAGGCAACGCTAACGTGCGGGACTCACCAAGTCACTACGGG
TGGAGGACTATATCGGACGGCGATGGTGTATCCATCTTTGGTGGAAGCCA
CGTGTGGGTTGATCATTGCTCTTTGTCTAATTGCAACGATGGGTTGATCG
ATGCCATTCATGGATCCACAGCCATCACAATCTCAAACAAATTACATGAC
CCACCATAACAAAGTGATGCTTCTGGG
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