CK933958

Overview
NameCK933958
Unique NameCK933958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1646 contig Csv1_Contig1646:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL19_ARATH (Putative pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.495e-65
Identity = 122/230 (53.04%), Postives = 158/230 (68.70%), Query Frame = 3
Query:  129 SSPVQDPELVVEEVHKSINASRRNL-----GFLS-----CGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            + P ++ +  +E +  S N++RR+L     G  S     C   NPID CWRC   W + R++L  C  GFG +  GGK G+IYVVT + D+D VNPKPGTLR+AVIQ EPLWIIF  DM I L +EL++NS KTID RGA+VH+A G  IT+Q+V N+IIHG++IH         +RDS  H+G RT +DGDG+SI+G S++W+DH S+S C DGLIDAI GST ITISN
Sbjct:   79 AKPEEEEKEFIEMLGSSTNSTRRSLRGKGKGKWSKLKGPCTASNPIDKCWRCRSDWAKRRKKLTRCVRGFGHRTTGGKRGRIYVVTSNLDEDMVNPKPGTLRHAVIQKEPLWIIFKNDMSIRLNQELLINSHKTIDARGANVHVAHGAGITMQFVKNVIIHGLHIHHISESSGGMIRDSVDHFGMRTRADGDGLSIYGSSNIWLDHISMSKCQDGLIDAIVGSTGITISN 308          

HSP 2 Score: 22.3274 bits (46), Expect = 1.495e-65
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            ++ THHN VMLL
Sbjct:  309 SHFTHHNDVMLL 320          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.587e-65
Identity = 115/210 (54.76%), Postives = 157/210 (74.76%), Query Frame = 3
Query:  159 VEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            + +V +    +RR   F S    N ID CWR D  W++NR++LADC +GFG++  GGK+G IYVVTD  D+D + PKPGT+R+AV +D PLWIIFAR M+I L++ELI+ + KTIDGRGA ++I GG  +T+Q+V N+IIH I+I   KRG    + DS  H+G RT+SDGDG++IFG ++VW+DH S+++C+DG+IDAI GSTAITISN
Sbjct:   81 LRQVGRGKKTTRRGGRFESL---NAIDKCWRGDKNWDKNRKKLADCVLGFGRKTTGGKNGPIYVVTDPSDNDLLKPKPGTIRHAVTRDRPLWIIFARSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLTLQFVRNVIIHNIHIKQIKRGAGGLIIDSEQHFGLRTVSDGDGINIFGATNVWIDHVSMTDCSDGMIDAIMGSTAITISN 287          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.637e-65
Identity = 122/229 (53.28%), Postives = 154/229 (67.25%), Query Frame = 3
Query:  144 DPELVVEEVHKSINASRRNLGFLSCGTG--------------NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            + E V+E +    N++RR+L     G G              NPID CWRC P W   R++L  C  GFG +  GGK G+IYVVT   DDD VNP+PGTLR+AVIQ EPLWI+F  DM I L +EL++ S KTID RGA+VHIA G  IT+QYV NIIIHG+++H   +     +RDS +H+G R  +DGDG+SIFG +++W+DH S+S C DGLIDAI GSTAITISN
Sbjct:   83 EEEDVIEMISSPTNSTRRSLTGRGKGKGKGKWSKLTGPCTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMVNPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVHNIIIHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGATNIWLDHISMSKCQDGLIDAIMGSTAITISN 311          

HSP 2 Score: 22.3274 bits (46), Expect = 5.637e-65
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            ++ THHN VMLL
Sbjct:  312 SHFTHHNDVMLL 323          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.029e-65
Identity = 111/191 (58.12%), Postives = 145/191 (75.92%), Query Frame = 3
Query:  216 CGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            C   NPID+CWRCD  W  NR++LADC +GFG++  GGKDG IYVV D+ D+D +NPKPGTLR+AV +D PLWIIFAR M+I L++EL++ S KTIDGRGA V+I  G  +T+Q+V N+IIH I +     G    +RDS +H G RT SDGDG+S+FG +++W+DH S++ C DG+IDAI GSTA+TISN
Sbjct:  101 CLAYNPIDNCWRCDRNWANNRKKLADCVLGFGRRTTGGKDGPIYVVKDASDNDLINPKPGTLRHAVTRDGPLWIIFARSMIIKLQQELMITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYVKHIVPGNGGLIRDSEAHIGLRTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGSTAVTISN 291          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.775e-64
Identity = 118/196 (60.20%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  213 SCGT-GNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDC---KRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            SC   GNPID+CWRCD  W++NR+ LADCA+GFG+ +IGG+ G+ Y VTDSGDD+P+NP PGTLRYA  QD+PLWIIF RDMVI LK++L + S+KTIDGRG +V IA GPC+T+  V+NIII+ + IHDC   KR    N   S   Y     SDGDG+SIF    +W+DHC+L  C DGLIDA++GST ITISN
Sbjct:   43 SCSANGNPIDECWRCDENWKDNRKNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKR----NALSSLGGY-----SDGDGISIFESRDIWIDHCTLEKCYDGLIDAVNGSTDITISN 229          

HSP 2 Score: 21.9422 bits (45), Expect = 2.775e-64
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            +YM +HN+VMLL
Sbjct:  230 SYMLNHNEVMLL 241          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 3.297e-62
Identity = 113/187 (60.43%), Postives = 135/187 (72.19%), Query Frame = 3
Query:  228 NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            NPID CWR +PKW  NRQ LA CA+G+GK AIGGK+G IYVVT+  D+ P  P PGTLRYAV Q +PLWI FARDMVI LK +L++NS+KTIDGRGA V IA GPC+ I+ V ++IIHGI+IHDCK   N                DGDG+ +F  +HVW+DHC LS C+DGLID I  STA+TISN
Sbjct:   36 NPIDACWRRNPKWATNRQALAHCAVGYGKAAIGGKNGPIYVVTNPSDN-PTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNG--------------MDGDGIRVFQSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISN 207          

HSP 2 Score: 23.483 bits (49), Expect = 3.297e-62
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  790 NYMTHHNKVMLL 825
            NY T H+KVMLL
Sbjct:  208 NYFTQHDKVMLL 219          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.177e-60
Identity = 112/191 (58.64%), Postives = 133/191 (69.63%), Query Frame = 3
Query:  216 CGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            C   N ID CWRCDP W ENRQ++ADCA+GFG  AIGGK G+IYVVTD+ DDD V+PKPGTLRY VIQ EPLWIIF ++M I L  ELI+ S KTIDGRG +VHI  G  I IQ  +NIII  + IH+        +R+S  H G R   +GDG+SIF    +W+DH S+S   DGLIDA+  ST ITISN
Sbjct:   42 CRAENAIDKCWRCDPNWAENRQKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVPTPGGLLRESEDHVGLRGSDEGDGISIFSSHDIWIDHISMSRATDGLIDAVAASTNITISN 232          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 7.139e-58
Identity = 113/207 (54.59%), Postives = 137/207 (66.18%), Query Frame = 3
Query:  177 SINASRRNLGFL---SCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            +INA RR L       C   N ID CWRCDP W E+RQ++ADCA+GFG  A+GGK G  Y+VTD+ DDD V+PKPGTLR+ VIQ  PLWI FAR M I L  ELI++S KTIDGRG  VHIA G  I IQ  +N+II  + IH+        +R+S  H G R   +GD +SIF    +W+DH S+S   DGLIDA+ GST ITISN
Sbjct:   27 AINAPRRKLTKKYRGPCMAVNSIDKCWRCDPFWAEDRQKMADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHNIVPTAGGLLRESDDHLGLRGADEGDAISIFNSHDIWIDHISMSRATDGLIDAVAGSTNITISN 233          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.807e-54
Identity = 114/220 (51.82%), Postives = 138/220 (62.73%), Query Frame = 3
Query:  135 PVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCK--RGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 788
            PV+  E  VEE   S N +RR+L   +C   N ID CWRC   W  NRQ LADCA GF K   GGK G +Y VT   DDD  NPK GTLR+A  Q+ PLWIIF R+MVI L +EL++NS KTIDGRG  V+I     +T+  V NIIIH INIHD K   GG     D P     R  SDGD +++ G S +W+DHCSLS  +DGL+D   GS+ +T+SN
Sbjct:   22 PVRSAE-DVEEFLPSANETRRSLK--ACEAHNIIDKCWRCKADWANNRQALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAG-LTLMNVKNIIIHNINIHDIKVCPGGMIKSNDGPPIL--RQQSDGDAINVAGSSQIWIDHCSLSKASDGLLDITLGSSHVTVSN 235          
BLAST of CK933958 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.376e-53
Identity = 114/218 (52.29%), Postives = 131/218 (60.09%), Query Frame = 3
Query:  147 PELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHD--CKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNKL 794
            P    E++ + + ++       +CGT N ID CWR    W ENR+ LADCA GF K  IGGKDG IY VT   DDD  NPK GTLR+   Q+ PLWIIFARDMVI L  EL +N+ KTIDGRGA V I       I  V NIIIH I +HD     GG     D P     R  SDGD + I GGS +W+DHCSLS   DGLIDA HGST  T+SN L
Sbjct:   22 PVRSAEDLQQILPSANETRSLTTCGTYNIIDGCWRGKADWAENRKALADCAQGFAKGTIGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFARDMVIRLDRELAINNDKTIDGRGAKVEIINAG-FAIYNVKNIIIHNIIMHDIVVNPGGLIKSHDGPPVP--RKGSDGDAIGISGGSQIWIDHCSLSKAVDGLIDAKHGSTHFTVSNCL 236          
The following BLAST results are available for this feature:
BLAST of CK933958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL19_ARATH1.495e-6553.04Putative pectate lyase 19 OS=Arabidopsis thaliana ... [more]
PEL6_ARATH1.587e-6554.76Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL7_ARATH5.637e-6553.28Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]
PEL3_ARATH6.029e-6558.12Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL21_ARATH2.775e-6460.20Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL4_ARATH3.297e-6260.43Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
PEL_TOBAC1.177e-6058.64Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL56_SOLLC7.139e-5854.59Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
MPA12_AMBAR2.807e-5451.82Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
MPA14_AMBAR2.376e-5352.29Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004543_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933958 ID=CK933958; Name=CK933958; organism=Citrus sinensis; type=EST; length=827bp
GGGGACTCCACTCTCCCCTTTACTTCATTTTCTTTCCTAGCAGAGAGAAA
GTGAGAGAGATTGAACAAATGGCAATTCCACTCTTGCTTTGGTTGCTCTT
GTGCCTTTTAGCTCCAACCTTCATTTCCTCTTCACCAGTTCAAGATCCTG
AATTAGTAGTGGAAGAAGTACACAAAAGCATCAATGCGTCTAGGAGGAAT
TTGGGGTTTCTGTCGTGTGGGACCGGCAATCCGATCGACGACTGCTGGCG
GTGTGACCCGAAGTGGGAAGAGAACCGGCAGCAGCTAGCGGATTGCGCCA
TCGGGTTCGGCAAGCAGGCCATTGGTGGGAAAGATGGTAAGATATATGTT
GTTACGGACTCCGGTGACGATGACCCAGTGAACCCAAAGCCAGGCACTCT
GAGGTATGCTGTGATCCAAGACGAGCCCCTATGGATCATTTTCGCACGTG
ACATGGTGATCACATTGAAAGAGGAGTTGATCATGAACTCGTTCAAGACC
ATCGACGGCCGAGGAGCGAGCGTACACATAGCCGGTGGTCCATGCATTAC
TATCCAGTACGTGACCAACATCATTATTCATGGGATTAATATACATGACT
GTAAGAGAGGAGGCAACGCTAACGTGCGGGACTCACCAAGTCACTACGGG
TGGAGGACTATATCGGACGGCGATGGTGTATCCATCTTTGGTGGAAGCCA
CGTGTGGGTTGATCATTGCTCTTTGTCTAATTGCAACGATGGGTTGATCG
ATGCCATTCATGGATCCACAGCCATCACAATCTCAAACAAATTACATGAC
CCACCATAACAAAGTGATGCTTCTGGG
back to top