CK933970

Overview
NameCK933970
Unique NameCK933970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 69/179 (38.55%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXLP 699
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D+   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IA    K+  +     P
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAP 194          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 69/179 (38.55%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXLP 699
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D+   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IA    K+  +     P
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL--ASKRAVEFQEAQAY-AEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAP 194          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 65/171 (38.01%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALK 669
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G +P+ ETSAK   NVE+AF  +A    K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-VPFLETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 66/171 (38.60%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALK 669
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE+AF  +A    K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 66/171 (38.60%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALK 669
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV    SF+N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A    K
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 174          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 65/166 (39.16%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 654
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK D+     +VV    A+ +    G IP+ ETSAK   NVE+AF  +A
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDFTTAKEYADQLG-IPFLETSAKNATNVEQAFMTMA 169          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 66/166 (39.76%), Postives = 106/166 (63.86%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 654
            L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V+ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    AS    DN   +++GNK D+    +R +  + A+A+ A +  IP+ ETSAK+  NVE+AF  ++
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYAS----DNVNKLLVGNKSDLT--ENRAIPYETAKAF-ADEIGIPFMETSAKDATNVEQAFMAMS 166          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 68/170 (40.00%), Postives = 103/170 (60.59%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKS 672
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS        + GNK D+   N R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IA    KS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 184          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 68/170 (40.00%), Postives = 103/170 (60.59%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKS 672
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS        + GNK D+   N R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IA    KS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 184          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 68/170 (40.00%), Postives = 103/170 (60.59%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKS 672
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS        + GNK D+   N R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IA    KS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 184          
The following BLAST results are available for this feature:
BLAST of CK933970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5C_CANFA3.654e-2838.55Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5C_BOVIN3.654e-2838.55Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB1B_MOUSE3.654e-2838.01Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_MACFA3.654e-2838.60Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1A_PIG3.654e-2838.60Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_LYMST3.654e-2839.16Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RBD2A_ARATH4.772e-2839.76Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB5B_PONAB4.772e-2840.00Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE4.772e-2840.00Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN4.772e-2840.00Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933970 ID=CK933970; Name=CK933970; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTTTGAAAATTCCACCGGACGACGCACGCAGAGCCTCAATAA
CAACTACGGAGCACGTCAAAACGATCAACTGATTTGCGTTTGGAGGTAGA
TCGTTCGATCGATTGACCGATTTTGCCCCAGAACGATGCCGTCTCGTAGA
AGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCAAGAC
CTCTTTGATGAATCAATATGTAAATAAGAAGTTTAGCAATCAGTACAAGG
CGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTTGAAGATAGG
CTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAGATTCCAAAG
CCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTACTTGTGTATG
ATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGGAGAGAAGAA
TTCCTCATTCAGGCTAGCCCTTCGGATCCAGACAATTTCCCCTTTGTTGT
TTTAGGAAACAAGATTGATGTAGATGGTGGAAACAGTAGGGTGGTTTCGG
AGAAGAAGGCTCGAGCATGGTGTGCCTCCAAAGGAAATATTCCTTACTTT
GAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTCCAGTGCAT
AGCTAANAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATNNNCTTGCCGG
ACACCATTGATGTTGGTAACAGCAGCCAG
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