CK933970

Overview
NameCK933970
Unique NameCK933970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 65/171 (38.01%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALK 669
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G +P+ ETSAK   NVE+AF  +A    K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-VPFLETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 67/171 (39.18%), Postives = 104/171 (60.82%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALK 669
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    A     +N   +++GNK D+     RVVS   A+ +  S G I + ETSAK   NVE+AF  +A    K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYAC----ENVNKLLVGNKSDLTA--KRVVSTDAAKEFAESLG-IEFLETSAKNAANVEKAFMMMAAQIKK 171          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 71/191 (37.17%), Postives = 111/191 (58.12%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXLPDTID-VGNSS 726
            + KV+++GDS VGK+ L+ ++   +F+   KATIG +F T+ +  + R    QIWDTAGQER++++  A+YRGA   +LVYD+   +SFD++  W EE    A      N   +++GNK D+  G  RVV  + A+ + A + N+ + ETSA E  NVE AF  +     +   ++     + +D  GNSS
Sbjct:   18 VFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHAD----KNIVIMLIGNKSDL--GTLRVVPTEDAKEF-AERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSS 201          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 71/197 (36.04%), Postives = 121/197 (61.42%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF--------QCIAXNALKSGEEEEXXLP--DTIDVG 717
            L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ +D++   QIWDTAGQER++++  A+YRGA   ++VYD+    +F+N+  W +E           N   +++GNK D+   + R VS + A+A+ A + N  + ETSA E +NVE AF        + +   AL+ G ++   LP   TI+VG
Sbjct:   14 LFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKEL----RDHTDQNIVIMLVGNKADL--RHLRAVSTEDAKAF-AERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVG-DDPAALPKGQTINVG 202          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 65/165 (39.39%), Postives = 105/165 (63.64%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 651
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNGLSFIETSALDYTNVEAAFQTI 168          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 68/171 (39.77%), Postives = 108/171 (63.16%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALK 669
            L K++++GDS VGK+ L+ ++ +  + + Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD   M+SF+N+  W  E    A+    ++   +++GNK D+    S+VVS +  RA  A +  IP+ ETSAK+ INVE+AF  IA    K
Sbjct:    8 LFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYAN----ESVCKLLIGNKNDM--VESKVVSTETGRA-LADELGIPFLETSAKDSINVEQAFLTIAGEIKK 171          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 66/177 (37.29%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  139 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNAL 666
            P  R  L KV+++G+ GVGKTS++ +YV++ FS  Y+ATIG DF  K + ++ R L  LQ+WD AGQERF ++   +Y+ A    +V+D++   +FD +  W+ +   +    +    P V+L NK D    NS+  S  +   +C   G   +FETSAK+ IN++EA + +  N L
Sbjct:   17 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDNSQ--SPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENML 191          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 74/192 (38.54%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXLP-DTIDVGNSSQ 729
            L K+I++GDSG GK+SL+ ++ +  +S  Y +TIG DF  K V+ ++    LQIWDTAGQERF+++   +YRGA   + VYDV +  SFD++    E +L         N   +++GNKID+   +SRVV   +A+   A + N+ Y E SAK   NVE+AF  IA        +     P  T+++ N+S+
Sbjct:    7 LFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHIT---ETWLQDIDKYATSNVCKLLIGNKIDL--VDSRVVLADEAK-HVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPTSTVNLSNASK 192          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 63/165 (38.18%), Postives = 103/165 (62.42%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 651
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +L YD+   ++FDN+  W  E           N   ++ GNK D+   + R VSE+  +A    +G + + ETSA E +NV++AFQ I
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLREL----RDHRDSNIVIILAGNKSDLK--HLRAVSEQDDQALVKKEG-LSFLETSALEALNVDKAFQTI 169          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXLPD---TIDVGNSSQ 729
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D+     R V  + A+ + A   ++ + ETSAK  +NV E F  IA    K+  +     P     +D+  SSQ
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASP----NIVIALAGNKADL--ATKRAVDFQDAQTY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQ 207          
The following BLAST results are available for this feature:
BLAST of CK933970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_RAT4.772e-2838.01Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
YPT1_PHYIN6.233e-2839.18Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RGP1_ORYSJ6.233e-2837.17Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11B_TOBAC6.233e-2836.04Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB11A_BOVIN6.233e-2839.39Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RABD1_ARATH6.233e-2839.77Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB32_MOUSE6.233e-2837.29Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
RAB1_THEAN8.140e-2838.54Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RB11A_TOBAC1.389e-2738.18Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB5C_CHICK1.389e-2737.50Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933970 ID=CK933970; Name=CK933970; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTTTGAAAATTCCACCGGACGACGCACGCAGAGCCTCAATAA
CAACTACGGAGCACGTCAAAACGATCAACTGATTTGCGTTTGGAGGTAGA
TCGTTCGATCGATTGACCGATTTTGCCCCAGAACGATGCCGTCTCGTAGA
AGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCAAGAC
CTCTTTGATGAATCAATATGTAAATAAGAAGTTTAGCAATCAGTACAAGG
CGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTTGAAGATAGG
CTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAGATTCCAAAG
CCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTACTTGTGTATG
ATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGGAGAGAAGAA
TTCCTCATTCAGGCTAGCCCTTCGGATCCAGACAATTTCCCCTTTGTTGT
TTTAGGAAACAAGATTGATGTAGATGGTGGAAACAGTAGGGTGGTTTCGG
AGAAGAAGGCTCGAGCATGGTGTGCCTCCAAAGGAAATATTCCTTACTTT
GAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTCCAGTGCAT
AGCTAANAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATNNNCTTGCCGG
ACACCATTGATGTTGGTAACAGCAGCCAG
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