CK933970

Overview
NameCK933970
Unique NameCK933970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4264 contig Csv1_Contig4264:382..1110. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.920e-61
Identity = 116/190 (61.05%), Postives = 149/190 (78.42%), Query Frame = 1
Query:  136 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXLPD 702
            M SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FPFV+LGNKID +  + ++VSEK A+    S G+IP F TSAK  INV+ AF+ IA +AL+  + +     D
Sbjct:    1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQADTEAFED 189          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: YPT71_SCHPO (GTP-binding protein ypt71 OS=Schizosaccharomyces pombe GN=ypt71 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.346e-57
Identity = 110/191 (57.59%), Postives = 145/191 (75.92%), Query Frame = 1
Query:  136 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXLPD 702
            M +++R  LKV+ILGDSGVGKT LMNQ+VN+KFS +YKATIGADFLTK+V  +D+L TLQ+WDTAGQERFQSLG+AFYRGADCCV+VY+VN+ KSFD++ NWR+EFL Q S  D   FPF+++GN+ID D  + R VS  +A  +C SK   N+ +FE SAKE  NV + F+ ++  AL++    +  + D
Sbjct:    1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS-QDECAFPFIIVGNQIDKD-ASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALENESSRDDFVND 189          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.739e-52
Identity = 102/197 (51.78%), Postives = 135/197 (68.53%), Query Frame = 1
Query:  142 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEE-EEXXLPDTIDVGNSSQ 729
            S +  LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DPD+FPFVVLGNK+D +    R V+ ++A+AWC   GN PY ETSAK+  NV  AF+      L   E+ E   L  TID+ + S+
Sbjct:    2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVDKE---DRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSK 195          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.240e-51
Identity = 100/197 (50.76%), Postives = 135/197 (68.53%), Query Frame = 1
Query:  142 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEE-EEXXLPDTIDVGNSSQ 729
            S +  LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP++FPFVVLGNK+D +    R V+ ++A+AWC   G+ PY ETSAK+  NV  AF+      L   E+ E   L  TID+ + S+
Sbjct:    2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE---DRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSK 195          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.525e-50
Identity = 99/197 (50.25%), Postives = 134/197 (68.02%), Query Frame = 1
Query:  142 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEE-EEXXLPDTIDVGNSSQ 729
            S +  LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP++FPFVVLGNK+D +    R V+ ++A+ WC   G+ PY ETSAK+  NV  AF+      L   E+ E   L  TID+ + S+
Sbjct:    2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSK 195          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.882e-50
Identity = 92/190 (48.42%), Postives = 132/190 (69.47%), Query Frame = 1
Query:  148 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXL-PDTIDV 714
            + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+      L + +  +  +  DT+++
Sbjct:    4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVNL 190          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.291e-49
Identity = 92/190 (48.42%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  148 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXL-PDTIDV 714
            + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+      L + +  +  +  DT+ +
Sbjct:    4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVSL 190          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 91/190 (47.89%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  148 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXL-PDTIDV 714
            + +L K+I+LGD GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNK D+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+      L + +  E  +  DT+++
Sbjct:    4 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSEHLIQTDTVNL 190          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.405e-49
Identity = 90/190 (47.37%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  148 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXL-PDTIDV 714
            + +L K+I+LGD GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNK D+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+      L + +  +  +  DT+++
Sbjct:    4 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSDHLIQTDTVNL 190          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.186e-40
Identity = 90/199 (45.23%), Postives = 125/199 (62.81%), Query Frame = 1
Query:  136 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEE-EEXXLPDTIDVGNSSQ 729
            M  R++  LK+II+G  GVGKTSL+++YV+K F   Y+ T+GA  L+K +  ED    LQIWDT GQERF+S+   FY+G+D CVL +DV  ++SF+ L  WR + L +  P +   +P VVLGNKID++    R V ++ A+ WC  K +IPYFE SAK  INV +AF+ +A  AL       E  L D+I +    Q
Sbjct:    1 MNPRKKVDLKLIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPME-QPYPMVVLGNKIDLE---DRQVPQEVAQGWCKEK-DIPYFEVSAKNDINVVQAFEMLASRALSRYRSILESYLTDSIKLSPEDQ 194          
The following BLAST results are available for this feature:
BLAST of CK933970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT7_YEAST1.920e-6161.05GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]
YPT71_SCHPO8.346e-5757.59GTP-binding protein ypt71 OS=Schizosaccharomyces p... [more]
RAB9B_MOUSE4.739e-5251.78Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_PONAB5.240e-5150.76Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_HUMAN1.525e-5050.25Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB9A_HUMAN9.882e-5048.42Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB9A_CANFA1.291e-4948.42Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB9A_MOUSE2.875e-4947.89Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB9A_RAT6.405e-4947.37Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB7B_BOVIN3.186e-4045.23Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933970 ID=CK933970; Name=CK933970; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTTTGAAAATTCCACCGGACGACGCACGCAGAGCCTCAATAA
CAACTACGGAGCACGTCAAAACGATCAACTGATTTGCGTTTGGAGGTAGA
TCGTTCGATCGATTGACCGATTTTGCCCCAGAACGATGCCGTCTCGTAGA
AGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCAAGAC
CTCTTTGATGAATCAATATGTAAATAAGAAGTTTAGCAATCAGTACAAGG
CGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTTGAAGATAGG
CTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAGATTCCAAAG
CCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTACTTGTGTATG
ATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGGAGAGAAGAA
TTCCTCATTCAGGCTAGCCCTTCGGATCCAGACAATTTCCCCTTTGTTGT
TTTAGGAAACAAGATTGATGTAGATGGTGGAAACAGTAGGGTGGTTTCGG
AGAAGAAGGCTCGAGCATGGTGTGCCTCCAAAGGAAATATTCCTTACTTT
GAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTCCAGTGCAT
AGCTAANAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATNNNCTTGCCGG
ACACCATTGATGTTGGTAACAGCAGCCAG
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