CK933970

Overview
NameCK933970
Unique NameCK933970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.866e-31
Identity = 71/165 (43.03%), Postives = 106/165 (64.24%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 651
            L K++++GDSGVGK+++++++    FS   K+TIG +F TK +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   +SFDN++ W  E    A  S       +++GNK D+   + R VSE + +A  A K  + + ETSA E +NVEEAFQ I
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSS----IVIMMVGNKSDLI--HLRAVSEDEGKA-LAEKEGLFFLETSAMEAVNVEEAFQTI 169          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.866e-31
Identity = 71/170 (41.76%), Postives = 106/170 (62.35%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNAL 666
            L K++++GDSGVGKT L+ ++    F++ Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V  ++A    A +  I +FETSAK  +NV+EAF  +A + L
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRKVQREQAER-LAREHRIRFFETSAKSSVNVDEAFSSLARDIL 170          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RB27B_RAT (Ras-related protein Rab-27B OS=Rattus norvegicus GN=Rab27b PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.027e-30
Identity = 80/203 (39.41%), Postives = 123/203 (60.59%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEE--EEXXLPDTIDVGNSSQ 729
            L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD    V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +    +K  E+  E+  +PDT++  NS +
Sbjct:    9 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLIGNKADL--LDQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTVNGVNSGK 205          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.342e-30
Identity = 71/170 (41.76%), Postives = 105/170 (61.76%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNAL 666
            L K++++GDSGVGKT L+ ++    F++ Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V  ++A    A +  I +FETSAK  +NV+EAF  +A + L
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRQVQREQAEK-LAREHRIRFFETSAKSSVNVDEAFSSLARDIL 170          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 72/180 (40.00%), Postives = 110/180 (61.11%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEEEEXXL 696
            L K I++GDS VGK++L+ Q+V+K+F+     TIG +F ++ +   D+   LQIWDTAGQE+F+S+  A+YRGA C ++VYD+    SF++LN+W    L         +   V++GNK D++   +R VS  +A+ + A K  + +FETSAK  +NV+EAF+      LK  E     L
Sbjct:   24 LFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSW----LTDCRKFSSCDVTTVLIGNKADLEA--NRQVSTSEAKEF-AEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGLL 196          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.904e-30
Identity = 77/202 (38.12%), Postives = 117/202 (57.92%), Query Frame = 1
Query:  139 PSRRRT----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXN-ALKSGEEEEXXLPDTIDVGNSSQ 729
            P+R R     L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW       AS    DN   +++GNK D+D  + R V   K +A  A +  I +FETSAK  +NVEE F  I  +   +  + +    P TI +  + Q
Sbjct:    5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMD-ESKRAVPTAKGQA-LADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQ 200          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 74/176 (42.05%), Postives = 108/176 (61.36%), Query Frame = 1
Query:  139 PSRRRT----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 654
            P+R R     L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW       AS    DN   +++GNK D+D  + R V   K +A  A +  I +FETSAK  +NVEE F  IA
Sbjct:    5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMD-ESKRAVPTAKGQA-LADEYGIKFFETSAKTNLNVEEVFFSIA 174          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 69/172 (40.12%), Postives = 113/172 (65.70%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKS 672
            LLK++++GDSGVGK+ ++ ++ + +F++ Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD+ SM SF+++  W  +    ASPS       +++GNK D++  + R V  K A+ + A + NIP  ETSAKE   ++EAF  +A +  KS
Sbjct:   33 LLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPS----VLKLIVGNKCDLN--SKRAVDFKIAKKF-ADELNIPIMETSAKESTAIDEAFIKLASDIKKS 197          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 68/166 (40.96%), Postives = 105/166 (63.25%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 654
            L+K++++GDSGVGK+ L+ ++   +F+  +  TIG DF  + +   ++   LQ+WDTAGQERF+++  A+YRGA   +LVYDV   KSF+N+ NW +     A+    +    +++GNK D+D    RVVS ++ +A  A K  IP+ E S+K  INVEE F  +A
Sbjct:   11 LIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYAN----EGVELILVGNKCDLD--EKRVVSTEQGQA-LADKFGIPFLEASSKTNINVEECFYSVA 169          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKS 672
            L K++++GDS VGK+  + ++ +  + + Y +TIG DF  + V+ E +   LQIWDTAGQERF+++  ++YRGA   ++VYD+  M+SF+N+  W +E    A+    D+   +++GNK D+    +R V    A+A+    G IP+ ETSAKE INVEEAF  ++    KS
Sbjct:    8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYAN----DSVRKLLVGNKCDL--AENRAVDTSVAQAYAQEVG-IPFLETSAKESINVEEAFLAMSAAIKKS 172          
The following BLAST results are available for this feature:
BLAST of CK933970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP2_ORYSJ7.866e-3143.03Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RAB13_RAT7.866e-3141.76Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RB27B_RAT1.027e-3039.41Ras-related protein Rab-27B OS=Rattus norvegicus G... [more]
RAB13_MOUSE1.342e-3041.76Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB2B_DICDI2.289e-3040.00Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
ARA3_ARATH3.904e-3038.12Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU5.099e-3042.05Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB1C_DICDI5.099e-3040.12Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RYL1_YARLI8.697e-3040.96Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
YPTM1_MAIZE1.136e-2940.12GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933970 ID=CK933970; Name=CK933970; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTTTGAAAATTCCACCGGACGACGCACGCAGAGCCTCAATAA
CAACTACGGAGCACGTCAAAACGATCAACTGATTTGCGTTTGGAGGTAGA
TCGTTCGATCGATTGACCGATTTTGCCCCAGAACGATGCCGTCTCGTAGA
AGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCAAGAC
CTCTTTGATGAATCAATATGTAAATAAGAAGTTTAGCAATCAGTACAAGG
CGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTTGAAGATAGG
CTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAGATTCCAAAG
CCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTACTTGTGTATG
ATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGGAGAGAAGAA
TTCCTCATTCAGGCTAGCCCTTCGGATCCAGACAATTTCCCCTTTGTTGT
TTTAGGAAACAAGATTGATGTAGATGGTGGAAACAGTAGGGTGGTTTCGG
AGAAGAAGGCTCGAGCATGGTGTGCCTCCAAAGGAAATATTCCTTACTTT
GAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTCCAGTGCAT
AGCTAANAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATNNNCTTGCCGG
ACACCATTGATGTTGGTAACAGCAGCCAG
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