CK933970

Overview
NameCK933970
Unique NameCK933970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RASN_CAVPO (GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  154 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF ++N +RE+        D D+ P V++GNK D+    +R V  K+A     S G IP+ ETSAK    VE+AF
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDLP---TRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAF 156          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 57/176 (32.39%), Postives = 97/176 (55.11%), Query Frame = 1
Query:  154 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGEE 681
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    +R V  K+A+    S G IP+ ETSAK    V++AF  +     K  E+
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKYDLP---TRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 169          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RASH_RRASV (Transforming protein p29 OS=Rasheed rat sarcoma virus GN=RAS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 57/168 (33.93%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  139 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            P    T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +  V  ++A+    S G IPY ETSAK    VE+AF
Sbjct:   56 PVEAMTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AAHTVESRQAQDLARSYG-IPYIETSAKTRPGVEDAF 215          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAP2B_RAT (Ras-related protein Rap-2b OS=Rattus norvegicus GN=Rap2b PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 53/160 (33.12%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D++G       E KA    A + + P+ ETSAK   +V+E F
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYERVPMILVGNKVDLEGEREVSYGEGKA---LAEEWSCPFMETSAKNKASVDELF 157          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAP2B_MOUSE (Ras-related protein Rap-2b OS=Mus musculus GN=Rap2b PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 53/160 (33.12%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D++G       E KA    A + + P+ ETSAK   +V+E F
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYERVPMILVGNKVDLEGEREVSYGEGKA---LAEEWSCPFMETSAKNKASVDELF 157          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 53/160 (33.12%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D++G       E KA    A + + P+ ETSAK   +V+E F
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYERVPMILVGNKVDLEGEREVSYGEGKA---LAEEWSCPFMETSAKNKASVDELF 157          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 53/160 (33.12%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D++G       E KA    A + + P+ ETSAK   +V+E F
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYERVPMILVGNKVDLEGEREVSYGEGKA---LAEEWSCPFMETSAKNKASVDELF 157          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 53/160 (33.12%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+F ++   + +      LVY + +  +F++L + RE+ L      D D+ P +++GNK D++  + RVV +++ +       N  + E+SAK  INV E F
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDLE--DERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIF 158          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAP1B_PONAB (Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1B PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 53/160 (33.12%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+F ++   + +      LVY + +  +F++L + RE+ L      D D+ P +++GNK D++  + RVV +++ +       N  + E+SAK  INV E F
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDLE--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAP1B_PANTR (Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 53/160 (33.12%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  163 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 642
            K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+F ++   + +      LVY + +  +F++L + RE+ L      D D+ P +++GNK D++  + RVV +++ +       N  + E+SAK  INV E F
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDLE--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
The following BLAST results are available for this feature:
BLAST of CK933970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_CAVPO4.477e-1835.58GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1[more]
RASK_RIVMA4.477e-1832.39GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]
RASH_RRASV4.477e-1833.93Transforming protein p29 OS=Rasheed rat sarcoma vi... [more]
RAP2B_RAT4.477e-1833.13Ras-related protein Rap-2b OS=Rattus norvegicus GN... [more]
RAP2B_MOUSE4.477e-1833.13Ras-related protein Rap-2b OS=Mus musculus GN=Rap2... [more]
RAP2B_HUMAN4.477e-1833.13Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG4.477e-1833.13Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
RAP1B_RAT4.477e-1833.13Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAP1B_PONAB4.477e-1833.13Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1... [more]
RAP1B_PANTR4.477e-1833.13Ras-related protein Rap-1b OS=Pan troglodytes GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933970 ID=CK933970; Name=CK933970; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTTTGAAAATTCCACCGGACGACGCACGCAGAGCCTCAATAA
CAACTACGGAGCACGTCAAAACGATCAACTGATTTGCGTTTGGAGGTAGA
TCGTTCGATCGATTGACCGATTTTGCCCCAGAACGATGCCGTCTCGTAGA
AGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCAAGAC
CTCTTTGATGAATCAATATGTAAATAAGAAGTTTAGCAATCAGTACAAGG
CGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTTGAAGATAGG
CTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAGATTCCAAAG
CCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTACTTGTGTATG
ATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGGAGAGAAGAA
TTCCTCATTCAGGCTAGCCCTTCGGATCCAGACAATTTCCCCTTTGTTGT
TTTAGGAAACAAGATTGATGTAGATGGTGGAAACAGTAGGGTGGTTTCGG
AGAAGAAGGCTCGAGCATGGTGTGCCTCCAAAGGAAATATTCCTTACTTT
GAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTCCAGTGCAT
AGCTAANAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATNNNCTTGCCGG
ACACCATTGATGTTGGTAACAGCAGCCAG
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