CK933970

Overview
NameCK933970
Unique NameCK933970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4264 contig Csv1_Contig4264:382..1110. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 65/165 (39.39%), Postives = 108/165 (65.45%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 651
            L K +++GDSGVGK++L+ ++   +F+ + K+TIG +F T+ +  +++    QIWDTAGQER++++  A+YRGA   ++VYD+    SFDN+  W +E    A      N   +++GNK D+   + R VS ++A+A+ A++ N+ + ETSA +  NVEEAFQ +
Sbjct:   10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKTDL--LHLRAVSTEEAQAF-AAENNLSFIETSAMDASNVEEAFQTV 167          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 66/165 (40.00%), Postives = 105/165 (63.64%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 651
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK D+   + R VSE+  +A  A K  + + ETSA E +N+E+AFQ I
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLK--HLRAVSEEDGQA-LAEKEGLSFLETSALEAVNIEKAFQTI 169          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RABO_DICDI (Ras-related protein RabO OS=Dictyostelium discoideum GN=rabO PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 67/179 (37.43%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS-------KGNIPYFETSAKEGINVEEAFQCIAXNALKS 672
            L++V++LGD  VGKT+    +  K+F       IG DF  K +  +++   LQ+WDT GQERF+++  +++R   CC+L + V+  KSF+N++ W   + +     D  N+P V++GNKID+      V+++K A  WC +       K +IPYFETSAK  IN+ E F   A   LK+
Sbjct:    8 LIRVVLLGDYCVGKTTTGFVFDGKQFDFSRNCNIGVDFFVKHIVVDNQCVRLQVWDTGGQERFKTITRSYFRNTSCCLLFFSVDDQKSFENIDMW---YSLAFEKYDLLNYPVVLVGNKIDLP-QEKHVITKKMAEEWCKNQQTKLNLKFSIPYFETSAKNNININEIFYSAAELGLKN 182          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 68/165 (41.21%), Postives = 108/165 (65.45%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 651
            L KV+++GDSGVGK++L++++   +F  + K+TIG +F T+ +Q E R    QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N++ W +E    A      N   +++GNK D+   + R V+ + A+++ A K  + + ETSA E +NVE+AFQ I
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMLIGNKTDLK--HLRAVATEDAQSY-AEKEGLSFIETSALEALNVEKAFQTI 169          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 68/166 (40.96%), Postives = 108/166 (65.06%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 654
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + V+ + ++  LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    AS    +N   +++GNK D+ G   +VV  + A+A+ A +  IP+ ETSAK   NVE+AF  +A
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYAS----ENVNKLLVGNKSDLTG--KKVVDYQAAKAF-ADEIGIPFLETSAKNATNVEQAFMTMA 166          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 67/165 (40.61%), Postives = 107/165 (64.85%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 651
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +F+N+  W +E    A      N   +++GNK D+   + R V  + A+A+C  +G + + ETSA E  NVE+AFQ I
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHAD----SNIVIMLVGNKSDLK--HLRDVQTEVAQAFCEREG-LSFIETSALESTNVEKAFQQI 169          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 75/184 (40.76%), Postives = 110/184 (59.78%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALKSGE 678
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + RVV E+ AR   A K  IPYFETSA  G N+ +A + +    +K  E
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRVVKEEDARG-LAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRME 186          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 75/187 (40.11%), Postives = 113/187 (60.43%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNALK--SGEEEEXXLPDTID 711
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + V+ + +   LQIWDTAGQERF+++  A+YRGA   + VYD+ + KSFDN+ NW       AS SD +    ++LGNK D++    R VS+++        G I + ETSAK  INVEEAF  +A + +   + +  E  L + +D
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--EKRQVSKERGEKLAIDYG-IKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEAVD 187          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNAL 666
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ETSAK   NVEEAF  +A + +
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAKSSTNVEEAFFTLARDIM 170          
BLAST of CK933970 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 1
Query:  157 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAXNAL 666
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ETSAK   NVEEAF  +A + +
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAKSSTNVEEAFFTLARDIM 170          
The following BLAST results are available for this feature:
BLAST of CK933970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT3_SCHPO1.136e-2939.39GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB2BV_BETVU1.136e-2940.00Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RABO_DICDI1.136e-2937.43Ras-related protein RabO OS=Dictyostelium discoide... [more]
RAA2A_ARATH1.136e-2941.21Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPTV1_VOLCA1.483e-2940.96GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPTC6_CHLRE1.483e-2940.61Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB27A_CANFA2.530e-2940.76Ras-related protein Rab-27A OS=Canis familiaris GN... [more]
RAB8_DISOM2.530e-2940.11Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8B_RAT2.530e-2941.76Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB2.530e-2941.76Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004543_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933970 ID=CK933970; Name=CK933970; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTTTGAAAATTCCACCGGACGACGCACGCAGAGCCTCAATAA
CAACTACGGAGCACGTCAAAACGATCAACTGATTTGCGTTTGGAGGTAGA
TCGTTCGATCGATTGACCGATTTTGCCCCAGAACGATGCCGTCTCGTAGA
AGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCAAGAC
CTCTTTGATGAATCAATATGTAAATAAGAAGTTTAGCAATCAGTACAAGG
CGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTTGAAGATAGG
CTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAGATTCCAAAG
CCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTACTTGTGTATG
ATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGGAGAGAAGAA
TTCCTCATTCAGGCTAGCCCTTCGGATCCAGACAATTTCCCCTTTGTTGT
TTTAGGAAACAAGATTGATGTAGATGGTGGAAACAGTAGGGTGGTTTCGG
AGAAGAAGGCTCGAGCATGGTGTGCCTCCAAAGGAAATATTCCTTACTTT
GAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTCCAGTGCAT
AGCTAANAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATNNNCTTGCCGG
ACACCATTGATGTTGGTAACAGCAGCCAG
back to top