CK933977

Overview
NameCK933977
Unique NameCK933977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1647 contig Csv1_Contig1647:1..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.156e-69
Identity = 125/220 (56.82%), Postives = 156/220 (70.91%), Query Frame = 3
Query:  138 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYD 788
            V+F+E+F   DGW  RW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK + LV QF+VKHEQ +DCGGGY+KL    +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPPK IKDPDA KPEDWD++  I DP D KPE +D
Sbjct:   21 VYFKEQFLDGDGWTERWIESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQPLVVQFTVKHEQNIDCGGGYVKLFPAGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEDWD 237          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 2.576e-69
Identity = 125/220 (56.82%), Postives = 156/220 (70.91%), Query Frame = 3
Query:  138 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYD 788
            V+F+E+F   DGW  RW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RP+ TY + IDN + +SGSL  DWD LPPK IKDPDA KPEDWDD+  I DP D KPE +D
Sbjct:   21 VYFKEQFLDGDGWTERWIESKHKPD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPAGLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDDRAKIDDPTDSKPEDWD 237          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.670e-68
Identity = 126/220 (57.27%), Postives = 163/220 (74.09%), Query Frame = 3
Query:  138 VFFEERFDDG-WESRWVTSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYD 788
            V+F+E F+D  WE RWV S  K D    G +  +AGK+ + +  D+GIQTS+D +FY+ +A+F  EFSNK KTLV Q++VKHEQ +DCGGGY+K++ G+ D   F G+TPY++MFGPDICG  T++VH IL Y G NKLIKKE+ C++D+LTH+YT IL  D TY + ID    Q+GSL  DWDLLP K IKDPDAKKPEDWD++EYI D ED KPE ++
Sbjct:   17 VYFKEEFNDASWEKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKEFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRGDADLADFHGETPYNVMFGPDICG-PTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNADNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDVKPEDWE 232          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.846e-67
Identity = 120/220 (54.55%), Postives = 159/220 (72.27%), Query Frame = 3
Query:  138 VFFEERF-DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYD 788
            ++F+E F DD WE RW+ S  K D    G+W  + GK+ GD   DKG++T++D +FY+I A+F + FSNK K+LV QFSVKHEQ +DCGGGY+KL++ +V+ +   G+TPY IMFGPDICG  TKKVH I  Y   N +IKK++ C+ D  TH+YT I+  D TY + ID  + +SG L +DWD LPPK IKDPDAKKPEDWD++E+I D +DKKPE +D
Sbjct:   19 IYFKEDFSDDDWEKRWIKSKHKDD---FGKWEISHGKFYGDAVKDKGLKTTQDAKFYSIGAKFDKSFSNKGKSLVIQFSVKHEQDIDCGGGYVKLMASDVNLEDSHGETPYHIMFGPDICGPGTKKVHVIFHYKDRNHMIKKDIRCKDDVFTHLYTLIVNSDNTYEVQIDGEKAESGELEADWDFLPPKKIKDPDAKKPEDWDEREFIDDEDDKKPEDWD 235          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.846e-67
Identity = 124/220 (56.36%), Postives = 162/220 (73.64%), Query Frame = 3
Query:  138 VFFEERFDDG-WESRWVTSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYD 788
            V+F+E F+D  WE RWV S  K D    G +  +AGK+ + +  D+GIQTS+D +FY+ +A+F  +FSNK KTLV Q++VKHEQ +DCGGGY+K++  + D   F G+TPY++MFGPDICG  T++VH IL Y G NKLIKKE+ C++D+LTH+YT IL  D TY + ID    Q+GSL  DWDLLP K IKDPDAKKPEDWD++EYI D ED KPE ++
Sbjct:   17 VYFKEEFNDASWEKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICG-PTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWE 232          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 9.163e-67
Identity = 123/219 (56.16%), Postives = 150/219 (68.49%), Query Frame = 3
Query:  138 VFFEERFD-DGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYD 788
            V+ +E FD + WE  W+ S  K      G++  T G +  D   DKGIQTS+D RFYA S +F  FSN+DK LV QFSVKHEQ +DCGGGY+KL    +DQ    G++PY IMFGPDICG  TKKVH I +Y G N LI K++ C+ D  TH YT I+RPD TY +LIDN + +SG+L  DWD L PK IKDP A KPEDWDD+  IPDP+DKKPE +D
Sbjct:   21 VYLKENFDNENWEDTWIYS--KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQFSVKHEQNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAPKKIKDPTATKPEDWDDRATIPDPDDKKPEDWD 237          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.563e-66
Identity = 126/225 (56.00%), Postives = 160/225 (71.11%), Query Frame = 3
Query:  138 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEI 806
            ++++E F+  WE+RW  S  K D    G++  T+GK+ GD   D GIQTS+D +FYAIS+     FSN+ K LV QFSVKHEQ +DCGGGY+KLL   VD  KF GDTPY IMFGPDICG +TKK+H ILTY G N L KKE  CETD L+H YT +++ D TY +L+D V+K+SG+L  DW++L PKTI DP+ KKP DW D+  + DPEDKKPE +D  P +I
Sbjct:   20 IYYKETFEPDWETRWTHSTAKSDY---GKFKLTSGKFYGDKAKDAGIQTSQDAKFYAISSPIASSFSNEGKDLVLQFSVKHEQDIDCGGGYLKLLPS-VDAAKFTGDTPYHIMFGPDICG-ATKKIHFILTYKGKNLLWKKEPRCETDTLSHTYTAVIKADRTYEVLVDQVKKESGTLEEDWEILKPKTIPDPEDKKPADWVDEPDMVDPEDKKPEDWDKEPAQI 239          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.050e-62
Identity = 113/225 (50.22%), Postives = 155/225 (68.89%), Query Frame = 3
Query:  138 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEI 806
            V+F E F +     WV S +  ++   GE+   AGK   DP  D G++T++D RFY I+ +  E FSN+ KT+V QF+VK ++ + CGG Y+KLL  ++D KKF G++PY IMFGPDICG +TKKVH I  Y G N LIKKE+PC+ D  TH+YT I+ P+  Y +L+DN + + GSL  DWD+LPPK I DP+ KKP+DW D+++I DP+DKKP+ +D  PK I
Sbjct:   19 VWFSETFPNESIENWVQSTYNAEKQ--GEFKVEAGKSPVDPIEDLGLKTTQDARFYGIARKISEPFSNRGKTMVLQFTVKFDKTVSCGGAYIKLLGSDIDPKKFHGESPYKIMFGPDICGMATKKVHVIFNYKGKNHLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNAKVEEGSLEDDWDMLPPKKIDDPNDKKPDDWVDEQFIDDPDDKKPDNWDQ-PKTI 240          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.470e-48
Identity = 96/203 (47.29%), Postives = 129/203 (63.55%), Query Frame = 3
Query:  138 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWD 737
            V+F+E F DG  W +RWV S    +++  G +  ++G + G    DKG+QT+++ RFYAISA F  FSNK KTL+ Q++VKHEQK+DCGGGY+KL   +VDQK   G + Y IMFGPDICG+  K VH IL +       KK + C+ D  TH+YT +LRPD TY + ID    +SGS+  DW L   K ++   A + E WD
Sbjct:   21 VYFQEEFLDGERWRNRWVHST---NDSQFGHFRLSSGNFYGHKEKDKGLQTTQNSRFYAISARFKPFSNKGKTLIIQYTVKHEQKMDCGGGYIKLFPADVDQKNLNGKSQYYIMFGPDICGFDIKTVHVILHFKNQYHANKKSIRCKVDSFTHLYTLVLRPDLTYEVKIDGQSIESGSIEYDWQLTSLKKMEKASA-EAEGWD 219          
BLAST of CK933977 vs. ExPASy Swiss-Prot
Match: CALR3_MOUSE (Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.507e-48
Identity = 96/206 (46.60%), Postives = 132/206 (64.08%), Query Frame = 3
Query:  138 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKE 746
            V+F+E F DG  W +RWV S    +++  G +  ++GK+ G    DKG+QT+++ RFYAISA F  FSNK KTLV Q++VKHEQK+DCGGGY+K+   ++DQKK  G + Y IMFGPDICG+  KKVH IL +       KK + C+ D  TH+YT ILRPD +Y + +D    +SGS+  DW+L   +   +  +    DWD  E
Sbjct:   21 VYFQEEFLDGERWRNRWVQST---NDSQFGHFRVSSGKFYGHKEKDKGLQTTQNSRFYAISASFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPSDLDQKKMNGKSQYYIMFGPDICGFDIKKVHVILYFKNQYHENKKPIRCKVDGFTHLYTLILRPDLSYEVKVDGQSIESGSIEYDWNLTSLRK-TEKTSLDSRDWDQVE 222          
The following BLAST results are available for this feature:
BLAST of CK933977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CALR_RABIT1.156e-6956.82Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_BOVIN2.576e-6956.82Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_CAEBR1.670e-6857.27Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]
CALR_ONCVO1.846e-6754.55Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_CAEEL1.846e-6756.36Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_DROME9.163e-6756.16Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR_EUGGR1.563e-6656.00Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR_SCHMA3.050e-6250.22Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR3_BOVIN1.470e-4847.29Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1[more]
CALR3_MOUSE2.507e-4846.60Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_H11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933977 ID=CK933977; Name=CK933977; organism=Citrus sinensis; type=EST; length=877bp
GGGGATATATTCAGTCCTCTTTCACACTTCACTCTACAGAGCACTTCCTC
TCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAGCTTTCTCTCTCTAAC
TCTCCTCACTATCGTCCTGACAATTGCCTCTGCTCACGTCTTCTTCGAAG
AACGCTTTGACGATGGATGGGAAAGCCGGTGGGTTACATCTGATTGGAAG
AAAGATGAGAACACGGCTGGAGAATGGAACTACACTGCTGGGAAATGGAA
TGGGGACCCGAATGATAAAGGTATTCAAACTAGTGAAGACTACAGGTTCT
ATGCTATTTCAGCTGAATTCCCTGAATTCAGCAACAAGGACAAGACACTC
GTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCTTGACTGTGGTGGTGG
CTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGAAGAAATTTGGTGGTG
ATACCCCTTACAGTATCATGTTTGGACCAGATATCTGTGGTTATAGCACT
AAGAAAGTGCATGCCATTCTTACCTACAATGGAACAAACAAATTGATCAA
GAAGGAAGTACCATGTGAGACTGACCAACTCACTCATGTTTATACTTTCA
TCCTCCGTCCAGATGCTACTTACAGCATCCTCATTGACAATGTGGAGAAA
CAATCTGGTAGCTTGTACTCTGATTGGGATCTCCTCCCTCCAAAGACCAT
CAAGGATCCTGACGCCAAGAAACCTGAAGACTGGGACGACAAAGAATATA
TTCCCGATCCTGAAGACAAGAAGCCAGAGGGCTATGATGACATTCCAAAG
GAGATAACAGATCCTGATGCCAAGAAGCCTGATGATTGGGATGATGAGGA
AGATGGTGAATGGACAGCTCCAACCAT
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