CK933983

Overview
NameCK933983
Unique NameCK933983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933983_ssr12 microsatellite CK933983_ssr12:12..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1957 contig Csv1_Contig1957:15..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.019e-31
Identity = 62/105 (59.05%), Postives = 84/105 (80.00%), Query Frame = 3
Query:  183 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.019e-31
Identity = 62/105 (59.05%), Postives = 84/105 (80.00%), Query Frame = 3
Query:  183 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.019e-31
Identity = 62/105 (59.05%), Postives = 84/105 (80.00%), Query Frame = 3
Query:  183 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.622e-31
Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  183 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.622e-31
Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  183 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.622e-31
Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  183 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.126e-30
Identity = 59/105 (56.19%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  183 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G+ K + +K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.391e-27
Identity = 56/103 (54.37%), Postives = 78/103 (75.73%), Query Frame = 3
Query:  183 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+    D    + +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F CNG +V+DPE+G++IQLQGDQR  V  F++    ++K+ IKIHGF
Sbjct:    8 SFDPFADTG--DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  180 SAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            + FDPFA+A            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L ++G+ K E +K+HGF
Sbjct:    7 NTFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of CK933983 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  183 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 491
            +FDPFA+    D  A S +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK L+K+F CNG +V+D E+G++IQLQGDQR  V  FL+    + K+ IKIHGF
Sbjct:    8 SFDPFADTG--DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
The following BLAST results are available for this feature:
BLAST of CK933983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1B_MOUSE1.019e-3159.05Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA1.019e-3159.05Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN1.019e-3159.05Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_PONAB8.622e-3157.14Eukaryotic translation initiation factor 1 OS=Pong... [more]
EIF1_HUMAN8.622e-3157.14Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN8.622e-3157.14Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE1.126e-3056.19Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_YEAST3.391e-2754.37Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_ANOGA7.554e-2753.85Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_ASHGO9.865e-2755.34Protein translation factor SUI1 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933983 ID=CK933983; Name=CK933983; organism=Citrus sinensis; type=EST; length=773bp
GGGGATCTCTGTCTCTCTCTCGCTTCTCTTGTTTCCGCTCTCGTAAGGCA
GTTTGATTCGCAATCTTCCTCTTAAGCTAAGAGCAATTTAAGTGAATTGA
AGCCAATTTCTTGCTGGTTACGGACTCTTTGACACTCCAACAACCAAGTT
TCATGTCTGAATTTGACACCCAGATTCCATCTGCCTTTGATCCCTTTGCT
GAGGCAAATGCTGAGGACTCAGGTGCTGGTTCAAAAGATTATGTGCATAT
TCGCGTGCAGCAACGTAATGGGAGGAAAAGCCTGACAACTGTGCAAGGGT
TGAAGAAAGAATTCAGCTACAACAAGATTCTCAAGGACCTCAAGAAAGAG
TTCTGCTGTAATGGTACTGTTGTACAGGACCCTGAGTTAGGCCAGGTCAT
ACAGCTTCAGGGTGACCAGAGGAAGAATGTGTCCACCTTCCTCGTTCAGG
CTGGTATTGTGAAGAAGGAATTCATCAAAATTCATGGTTTCTAAATAGTG
GGAGCCAAGTTGCTATATGTTGTTTATCCATCTCCAACTATTGGTAGCAA
GAAGTATATGATCTATATATTAATTTATTATCGACTGTTGTGTAATGTAA
CGCTGTCCAAACAAAAAGTTTGATGCAAGCTTGCTTGTGCGTTTAAACTT
TTTAGTTTGTAGTAGTGTTCTTTTGTTTGGGAATATTATGGTTTCTTCCA
AGACTTATTTTAAGCAAAATAAAATGTATTCCTGCTTTCAATTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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