CK933990

Overview
NameCK933990
Unique NameCK933990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:19..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933990 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 52/186 (27.96%), Postives = 85/186 (45.70%), Query Frame = 1 
Query:  376 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDEAWDDQW 882
            + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA     LV          F+++++   G   + +LA  +ST            A E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  V      AW   W
Sbjct:   44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219
[Close]
BLAST of CK933990 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 52/186 (27.96%), Postives = 85/186 (45.70%), Query Frame = 1 
Query:  376 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDEAWDDQW 882
            + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA     LV          F+++++   G   + +LA  +ST            A E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  V      AW   W
Sbjct:   44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219
The following BLAST results are available for this feature:
BLAST of CK933990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
GLPF_ECOL67.497e-1127.96Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO577.497e-1127.96Glycerol uptake facilitator protein OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_G01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933990 ID=CK933990; Name=CK933990; organism=Citrus sinensis; type=EST; length=901bp
GGGGATACCNNNAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAA
AAGGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCT
CTGTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACT
GGGGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACC
GCCGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACA
GAGCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACT
GTCTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGT
CGACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTG
GCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCAC
ATTAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTT
GGTCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCG
GTGTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGA
GGTGGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGC
CGCCGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCA
CTGATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCG
CTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAAT
CACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTT
ACAACAAGGACGAAGCTTGGGATGATCAATGGCTCTTCTGGGTTGGNNNN
N
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