CK933992 | Citrus Genome Database

Overview


Name	CK933992
Unique Name	CK933992
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	894

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK933992_ssr317	microsatellite	CK933992_ssr317:317..328.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8273	contig	Csv1_Contig8273:1851..2742.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: H90A1_DANRE (Heat shock protein HSP 90-alpha 1 OS=Danio rerio GN=hsp90a.1 PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 8.079e-42
Identity = 87/185 (47.03%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L +Y+ K   +V+KEGL+L +D ++K    ELK  ++ L K  K  L  + ++ V VSNRL ++PC +VTS YGW+ANMERIM+SQ L D S   YM  K+ LEINP HPI++ LRE+   D  D  V+    L+++TAL+ SGF+L+DP+  A+RIY  +K  L I
Sbjct:  508 GLEVIYMIEPIDEYCVQQLKEYDGKNLVSVTKEGLELPEDEEEKKKQDELKAKYENLCKIMKDIL-DKKIEKVTVSNRLVSSPCCIVTSTYGWTANMERIMKSQALRDNSTMGYMTAKKHLEINPAHPIVETLREKAEADKNDKAVKDLVILLFETALLSSGFTLDDPQTHANRIYRMIKLGLGI 691

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.378e-41
Identity = 84/185 (45.41%), Postives = 124/185 (67.03%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V++V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  507 GFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEIL-DKKVEEVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 690

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.351e-41
Identity = 89/185 (48.11%), Postives = 126/185 (68.11%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++  DP+DEY +Q L +Y+ KK  +V+KEGL+L +  ++K    E K +++ L K  K  L  + V+ V VSNRL ++PC +VTS+YGWSANMERIM++Q L D+S   YM  K+ LEINP H I+K LR+RV  D  D  V+    L+++TAL+ SGFSL +P+  ASRIY  +K  L+I
Sbjct:  485 GFEVLYMCDPIDEYCVQQLKEYDGKKLVSVTKEGLELPETEEEKKKFEEDKVAYENLCKVIKDIL-EKKVEKVGVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKKHLEINPDHAIMKTLRDRVEVDKNDKTVKDLVVLLFETALLASGFSLEEPQSHASRIYRMIKLGLDI 668

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 169.088 bits (427), Expect = 3.070e-41
Identity = 84/185 (45.41%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  507 GFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEIL-DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 690

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.070e-41
Identity = 84/185 (45.41%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  507 GFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEIL-DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 690

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.070e-41
Identity = 84/185 (45.41%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  507 GFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEIL-DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 690

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 169.088 bits (427), Expect = 3.070e-41
Identity = 84/185 (45.41%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  507 GFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEIL-DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 690

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 3.070e-41
Identity = 84/185 (45.41%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  507 GFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEIL-DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 690

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 3.070e-41
Identity = 84/185 (45.41%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  507 GFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEIL-DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 690

[Close]

BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.237e-41
Identity = 86/185 (46.49%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L D++ K   +V+KEGL+L +D  +K    E K  F+ L K  K  L  + V+ V VSNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL+DP+  ++RIY  +K  L I
Sbjct:  506 GFEVLYMTEPIDEYCVQQLKDFDGKSLVSVTKEGLELPEDEDEKKKMEEDKAKFENLCKLMKEIL-DKKVEKVTVSNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIMETLRQKAEADKNDKAVKDLVILLFETALLSSGFSLDDPQTHSNRIYRMIKLGLGI 689

The following BLAST results are available for this feature:

BLAST of CK933992 vs. ExPASy Swiss-Prot

BLAST of CK933992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315


Match Name	E-value	Identity	Description
H90A1_DANRE	8.079e-42	47.03	Heat shock protein HSP 90-alpha 1 OS=Danio rerio G...	[more]
HS90B_PONAB	1.378e-41	45.41	Heat shock protein HSP 90-beta OS=Pongo abelii GN=...	[more]
HSP90_CAEEL	2.351e-41	48.11	Heat shock protein 90 OS=Caenorhabditis elegans GN...	[more]
HS90B_RAT	3.070e-41	45.41	Heat shock protein HSP 90-beta OS=Rattus norvegicu...	[more]
HS90B_MOUSE	3.070e-41	45.41	Heat shock protein HSP 90-beta OS=Mus musculus GN=...	[more]
HS90B_MACFA	3.070e-41	45.41	Heat shock protein HSP 90-beta OS=Macaca fascicula...	[more]
HS90B_HUMAN	3.070e-41	45.41	Heat shock protein HSP 90-beta OS=Homo sapiens GN=...	[more]
HS90B_HORSE	3.070e-41	45.41	Heat shock protein HSP 90-beta OS=Equus caballus G...	[more]
HS90B_BOVIN	3.070e-41	45.41	Heat shock protein HSP 90-beta OS=Bos taurus GN=HS...	[more]
HS90B_DANRE	5.237e-41	46.49	Heat shock protein HSP 90-beta OS=Danio rerio GN=h...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004542_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_G03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK933992 ID=CK933992; Name=CK933992; organism=Citrus sinensis; type=EST; length=894bp
GGGCTATGAGGTGATTTTCTTCACTGATCCAGTTGATGAATACCTGATGC
AATACCTGATGGATTATGAAGACAAAAAGTTCCAAAATGTATCTAAAGAG
GGTCTTAAACTTGGTAAAGACACTAAAGATAAGGAACTTAAGGAGTCATT
CAAGGAGCTCACGAAATGGTGGAAGGGTGCTCTTGCCAGCGAGAACGTGG
ATGATGTGAAAGTAAGCAACCGCTTGGATAACACCCCTTGCGTAGTTGTG
ACATCAAAGTATGGTTGGAGTGCGAATATGGAGAGGATCATGCAGTCTCA
GACTCTCTCAGATGCTAGCAAGCAAGCATATATGCGGGGCAAGAGGGTGC
TTGAAATCAATCCAAGGCATCCAATCATCAAAGAGCTCCGGGAGAGAGTC
GTCAAGGACCCTGAGGATGCGGGTGTCCAGCAAACAGCCCAACTCATTTA
CCAGACGGCACTCATGGAGAGTGGCTTTTCGCTCAATGATCCCAAGGATT
TTGCCTCCCGAATTTACAGCACGGTGAAATCTAGCCTTAACATTAGCCCT
GATGCAGCTGTTGAGGAGGAAGATGATGTAGAAGAGACTGATGCTGACAC
TGAAATGAAAGAATCTTCGGCTGCCAAAGAGGACGTGGATACAGAGTATT
CTGGCAAGGATGAGTTGTAGATTGCCTAATAAAAGCATGGGCAACAACAT
CCCAGTTTCTTAGGAAAGCATAAACGCTCTGCATAGTGCGTTCATTTCCA
GTTTTGAAAACTTTGGTGAAAAAACGTTTTAGATCTTAGATTCAATGTAA
CCATAATCACCGGGAATTTTGTCTTTTAACAGTTGACACTATCAATTATG
GATGAATCAGCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA