CK933992

Overview
NameCK933992
Unique NameCK933992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933992_ssr317 microsatellite CK933992_ssr317:317..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8273 contig Csv1_Contig8273:1851..2742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.599e-40
Identity = 83/185 (44.86%), Postives = 123/185 (66.49%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G+EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   +  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  508 GFEVVYMTEPIDEYCVQQLKEFDGKTLVSVTKEGLELPEDEEEKKNMEESKAKFETLCKLMKEIL-DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKADANKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 691          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HSP83_LEIDO (Heat shock protein 83 (Fragment) OS=Leishmania donovani GN=HSP83 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 82/185 (44.32%), Postives = 123/185 (66.49%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFK----ELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EV+F T+P+DEY+MQ + D+EDKKF  ++KEG+   +  ++K+ +E  K    +  K  K  L  + V+ V VS+RL  +PC++VTS++GWSA+ME+IM++Q + D+S  AYM  K+ +E+NPRHPIIK LR RV  D  D  V+    L++ T+L+ SGF L DP  +A RI   +K  L++
Sbjct:  239 GLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKRCKTMKEVLG-DKVEKVTVSDRLSTSPCILVTSEFGWSAHMEQIMRNQAVRDSSMSAYMMSKKTMELNPRHPIIKVLRRRVEADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAKRINRMIKLGLSL 422          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L ++E K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V VSNRL  +PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP H II+ LR++   D  D  V+    L+Y+TAL+ SGFSL DP+  A+RIY  +K  L I
Sbjct:  516 GLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL-EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 699          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L ++E K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V VSNRL  +PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP H II+ LR++   D  D  V+    L+Y+TAL+ SGFSL DP+  A+RIY  +K  L I
Sbjct:  516 GLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL-EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 699          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L ++E K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V VSNRL  +PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP H II+ LR++   D  D  V+    L+Y+TAL+ SGFSL DP+  A+RIY  +K  L I
Sbjct:  516 GLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL-EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 699          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L ++E K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V VSNRL  +PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP H II+ LR++   D  D  V+    L+Y+TAL+ SGFSL DP+  A+RIY  +K  L I
Sbjct:  516 GLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL-EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 699          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L ++E K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V VSNRL  +PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP H II+ LR++   D  D  V+    L+Y+TAL+ SGFSL DP+  A+RIY  +K  L I
Sbjct:  516 GLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL-EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 699          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L ++E K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V VSNRL  +PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP H II+ LR++   D  D  V+    L+Y+TAL+ SGFSL DP+  A+RIY  +K  L I
Sbjct:  515 GLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL-EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 698          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90A_HORSE (Heat shock protein HSP 90-alpha (Fragment) OS=Equus caballus GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L ++E K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V VSNRL  +PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP H II+ LR++   D  D  V+    L+Y+TAL+ SGFSL DP+  A+RIY  +K  L I
Sbjct:  505 GLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL-EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 688          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 544
            G EVI+  +P+DEY +Q L ++E K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V+ V VSNRL  +PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP H II+ LR++   D  D  V+    L+Y+TAL+ SGFSL DP+  A+RIY  +K  L I
Sbjct:  511 GLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKAKFENLCKIMKDIL-EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 694          
The following BLAST results are available for this feature:
BLAST of CK933992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
HS90B_CHICK2.599e-4044.86Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HSP83_LEIDO3.394e-4044.32Heat shock protein 83 (Fragment) OS=Leishmania don... [more]
HS90A_RAT3.394e-4047.57Heat shock protein HSP 90-alpha OS=Rattus norvegic... [more]
HS90A_PIG3.394e-4047.57Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H... [more]
HS90A_PANTR3.394e-4047.57Heat shock protein HSP 90-alpha OS=Pan troglodytes... [more]
HS90A_MOUSE3.394e-4047.57Heat shock protein HSP 90-alpha OS=Mus musculus GN... [more]
HS90A_MACFA3.394e-4047.57Heat shock protein HSP 90-alpha OS=Macaca fascicul... [more]
HS90A_HUMAN3.394e-4047.57Heat shock protein HSP 90-alpha OS=Homo sapiens GN... [more]
HS90A_HORSE3.394e-4047.57Heat shock protein HSP 90-alpha (Fragment) OS=Equu... [more]
HS90A_CHICK3.394e-4047.57Heat shock protein HSP 90-alpha OS=Gallus gallus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933992 ID=CK933992; Name=CK933992; organism=Citrus sinensis; type=EST; length=894bp
GGGCTATGAGGTGATTTTCTTCACTGATCCAGTTGATGAATACCTGATGC
AATACCTGATGGATTATGAAGACAAAAAGTTCCAAAATGTATCTAAAGAG
GGTCTTAAACTTGGTAAAGACACTAAAGATAAGGAACTTAAGGAGTCATT
CAAGGAGCTCACGAAATGGTGGAAGGGTGCTCTTGCCAGCGAGAACGTGG
ATGATGTGAAAGTAAGCAACCGCTTGGATAACACCCCTTGCGTAGTTGTG
ACATCAAAGTATGGTTGGAGTGCGAATATGGAGAGGATCATGCAGTCTCA
GACTCTCTCAGATGCTAGCAAGCAAGCATATATGCGGGGCAAGAGGGTGC
TTGAAATCAATCCAAGGCATCCAATCATCAAAGAGCTCCGGGAGAGAGTC
GTCAAGGACCCTGAGGATGCGGGTGTCCAGCAAACAGCCCAACTCATTTA
CCAGACGGCACTCATGGAGAGTGGCTTTTCGCTCAATGATCCCAAGGATT
TTGCCTCCCGAATTTACAGCACGGTGAAATCTAGCCTTAACATTAGCCCT
GATGCAGCTGTTGAGGAGGAAGATGATGTAGAAGAGACTGATGCTGACAC
TGAAATGAAAGAATCTTCGGCTGCCAAAGAGGACGTGGATACAGAGTATT
CTGGCAAGGATGAGTTGTAGATTGCCTAATAAAAGCATGGGCAACAACAT
CCCAGTTTCTTAGGAAAGCATAAACGCTCTGCATAGTGCGTTCATTTCCA
GTTTTGAAAACTTTGGTGAAAAAACGTTTTAGATCTTAGATTCAATGTAA
CCATAATCACCGGGAATTTTGTCTTTTAACAGTTGACACTATCAATTATG
GATGAATCAGCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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