CK933992

Overview
NameCK933992
Unique NameCK933992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933992_ssr317 microsatellite CK933992_ssr317:317..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8273 contig Csv1_Contig8273:1851..2742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_ACTP2 (Chaperone protein htpG OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=htpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 52/177 (29.38%), Postives = 88/177 (49.72%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFK----ELTKWWKGALA--SENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRI 514
            G EV+  +D +DE+++ +L +++ K  Q+++K  L LG D  DKE +ES K    E   + + A +   E V  V +++RL +TP VV T       N E   Q   L  A  Q     K   E+NP H ++K++ +      ++       +L+++ AL+    SL +P  F  R+
Sbjct:  455 GIEVLLLSDRIDEWVVGHLTEFDGKPLQSITKSDLDLG-DLADKEQEESQKAQQAEFGSFLERAQSYFGERVKKVVLTHRLTDTPAVVSTD------NDEMTTQMAKLFAAMGQKAPEVKYTFELNPDHRMVKKIADLT----DETKFNDWIELLFEQALLAERGSLENPAAFIKRM 620          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_METRJ (Chaperone protein htpG OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=htpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 52/181 (28.73%), Postives = 87/181 (48.07%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK---DTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSS 535
            G EV+  +D VD +    L  ++ K  ++++K GL L K   + +  E  E         K AL +E V DV+ ++RL ++  V+     G    M+R+M+    + A       G+ VLEINPRHP+I     R +    ++ V Q A  +   A ++ G S  DP  FA  + + + ++
Sbjct:  440 GLEVLLLSDHVDAFWPDQLGTFDGKPLRSITKGGLDLSKFALEGEQPEAPEGIDAFVAAVKTALGAE-VSDVRTTDRLVDSAVVLSAGSGGPDLQMQRLMRRAGRAGA-------GQPVLEINPRHPLI-----RALAAAPESEVPQAAGTLLDLARIQDGDSPRDPAAFARTVAAALAAA 607          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_ANAPZ (Chaperone protein htpG OS=Anaplasma phagocytophilum (strain HZ) GN=htpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 55/190 (28.95%), Postives = 78/190 (41.05%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLK-------------------LGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRI 514
            G EVI   DPVD++    + +Y+   F++V + G K                    G+   DKE   SF E  K     +    V DV+VS +L  +   +          MER ++ Q      KQ   +G R+LEIN  HPI K L +      E   +     L+Y  A +  G  +    DFASRI
Sbjct:  447 GIEVILLVDPVDDFWTSVVSEYKGVPFKSVMRVGEKDLEKCIGASDDSGDKTSEDSGESASDKESIGSFIEYLK----KVLDGVVSDVRVSKKLTTSLVCLAVPDNSMDIRMERFLREQ------KQLNYKGNRILEINIDHPIAKSLLKEHEARGESELLNGIVHLLYDEACIIEGEEIRSTVDFASRI 626          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: TRAP1_BOVIN (Heat shock protein 75 kDa, mitochondrial OS=Bos taurus GN=TRAP1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 50/186 (26.88%), Postives = 92/186 (49.46%), Query Frame = 2
Query:    8 EVIFFTDPVDEYLMQYLMDYEDKKFQNVS---------KEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSL 538
            EV+F  +  DE  + +L +++ KK  +V          +E  + G    D   ++  ++L  W + AL S  + DVKV+ RLD  P ++   + G + +  R+ Q   L+   ++     +  LEINPRH +IK+L +  ++D E    Q     IY+ A++ +G  ++DP+    R+   +  +L
Sbjct:  522 EVLFCYEQFDELTLLHLREFDKKKLISVETDIVVDHYKEEKFEDGAPAGDCLSEKETEDLMAWMRNALGSR-ITDVKVTLRLDTHPAMITVLEMGAARHFLRMRQ---LAKTQEERAQLLQPTLEINPRHVLIKKLSQ--LRDSEPDLAQLLVDQIYENAMITAGL-IDDPRPMVGRLNQLLVKAL 700          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_NEOSM (Chaperone protein htpG OS=Neorickettsia sennetsu (strain Miyayama) GN=htpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 45/173 (26.01%), Postives = 84/173 (48.55%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGL---------KLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDP 493
            G +V+FFTDPVD++ +    +Y+    +++++  +         K G++ +    KE  + + K  +  +  + V+ V++S RL  +P  +          ME+ M  Q      KQ + R K++LEIN  HP+I ++  + V  PE   V+    L+Y  A +  G  + +P
Sbjct:  446 GLDVLFFTDPVDDFWISVSHEYKSYNIKSITRSSIDLDAFAELEKAGQEVQQHHDKEIDRLIAKMQE--VLKDEVESVRISKRLTESPVCLAVPDGAMDIRMEKFMLEQ------KQLHSRSKKILEINASHPVIGKIIGK-VDSPE---VEDLIFLLYDQACILQGDEVRNP 606          
The following BLAST results are available for this feature:
BLAST of CK933992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
HTPG_ACTP25.647e-1129.38Chaperone protein htpG OS=Actinobacillus pleuropne... [more]
HTPG_METRJ7.375e-1128.73Chaperone protein htpG OS=Methylobacterium radioto... [more]
HTPG_ANAPZ7.375e-1128.95Chaperone protein htpG OS=Anaplasma phagocytophilu... [more]
TRAP1_BOVIN9.632e-1126.88Heat shock protein 75 kDa, mitochondrial OS=Bos ta... [more]
HTPG_NEOSM9.632e-1126.01Chaperone protein htpG OS=Neorickettsia sennetsu (... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933992 ID=CK933992; Name=CK933992; organism=Citrus sinensis; type=EST; length=894bp
GGGCTATGAGGTGATTTTCTTCACTGATCCAGTTGATGAATACCTGATGC
AATACCTGATGGATTATGAAGACAAAAAGTTCCAAAATGTATCTAAAGAG
GGTCTTAAACTTGGTAAAGACACTAAAGATAAGGAACTTAAGGAGTCATT
CAAGGAGCTCACGAAATGGTGGAAGGGTGCTCTTGCCAGCGAGAACGTGG
ATGATGTGAAAGTAAGCAACCGCTTGGATAACACCCCTTGCGTAGTTGTG
ACATCAAAGTATGGTTGGAGTGCGAATATGGAGAGGATCATGCAGTCTCA
GACTCTCTCAGATGCTAGCAAGCAAGCATATATGCGGGGCAAGAGGGTGC
TTGAAATCAATCCAAGGCATCCAATCATCAAAGAGCTCCGGGAGAGAGTC
GTCAAGGACCCTGAGGATGCGGGTGTCCAGCAAACAGCCCAACTCATTTA
CCAGACGGCACTCATGGAGAGTGGCTTTTCGCTCAATGATCCCAAGGATT
TTGCCTCCCGAATTTACAGCACGGTGAAATCTAGCCTTAACATTAGCCCT
GATGCAGCTGTTGAGGAGGAAGATGATGTAGAAGAGACTGATGCTGACAC
TGAAATGAAAGAATCTTCGGCTGCCAAAGAGGACGTGGATACAGAGTATT
CTGGCAAGGATGAGTTGTAGATTGCCTAATAAAAGCATGGGCAACAACAT
CCCAGTTTCTTAGGAAAGCATAAACGCTCTGCATAGTGCGTTCATTTCCA
GTTTTGAAAACTTTGGTGAAAAAACGTTTTAGATCTTAGATTCAATGTAA
CCATAATCACCGGGAATTTTGTCTTTTAACAGTTGACACTATCAATTATG
GATGAATCAGCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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