CK933992

Overview
NameCK933992
Unique NameCK933992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933992_ssr317 microsatellite CK933992_ssr317:317..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8273 contig Csv1_Contig8273:1851..2742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_MYCLE (Chaperone protein htpG OS=Mycobacterium leprae GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.096e-20
Identity = 61/189 (32.28%), Postives = 103/189 (54.50%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSK-------EGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQ---TAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSL 538
            GYEV+  TDPVDE  +    +++ K  ++V++       E  K   + + KE +++F  L  W K  L S++V +V++S RL  +P  ++T  +G +  + RI +      AS Q    GKR+LE+NP HP+I  L++      +D  ++Q   TA+L+Y TAL+  G +L +P  FA  +   +  S+
Sbjct:  475 GYEVLLLTDPVDEVWVGMAPEFDGKPLKSVARGEVDLESEEEKTAHEAERKEQEQNFAGLVNWLKETL-SDHVKEVRLSTRLTESPACLITDAFGITPALARIYR------ASGQDVPFGKRILELNPNHPLITGLQQAHENGGDDTHLRQLSETAELLYGTALLAEGGALENPAKFAGLLADLLSRSM 656          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_BDEBA (Chaperone protein htpG OS=Bdellovibrio bacteriovorus GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.135e-19
Identity = 62/180 (34.44%), Postives = 103/180 (57.22%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLG-------KDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQT--AQLIYQTALMESGFSLNDPKDFASRI 514
            G+EV+   DPVDE+++  L +++ KK Q++ +EGL L        K+ + K+ + + K + +  K  L S+ V DV +S+RL NTP  +V S    SA+M+++M       A +Q     KR++EINP HP+ +++   +   PE    QQT  A+++Y  AL+  G +L DP  F+ +I
Sbjct:  445 GFEVLLLVDPVDEWVVDALSEFKGKKLQSIMREGLDLDTAEEKQQKEQEKKQAEVTLKPVLESMKKTLESD-VKDVVLSDRLTNTPACLVASSADPSAHMQKLMAQMGKEYAGQQV----KRIMEINPNHPVFEKM---LKASPE----QQTKWAEILYAQALLTEGSNLPDPVKFSQQI 612          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_SACD2 (Chaperone protein htpG OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.483e-19
Identity = 55/177 (31.07%), Postives = 104/177 (58.76%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK-----DTKDKE-LKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRI 514
            G EV+  ++ +D++LM +LM+Y+ K+FQ+V K  L LGK     D K++E ++E+     +  K ALA E V++V++++RL  +P  +V  ++   A M R++      +A+ QA    K ++EINP HP++++L +    + ++   +  + +++  A +  G SL DP  + SR+
Sbjct:  461 GIEVLLLSNRIDDWLMGHLMEYDGKQFQDVGKGSLDLGKLDSEEDKKEQEKVEEAMAPFVERMKAALA-EQVEEVRITHRLTESPACLVVGEHDMGAQMRRLL------EAAGQAVPESKPIIEINPTHPLVQKLDQ----EQDEDRFKDLSHILFDQASLAEGGSLKDPAAYVSRL 626          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_MYCGI (Chaperone protein htpG OS=Mycobacterium gilvum (strain PYR-GCK) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.529e-19
Identity = 57/175 (32.57%), Postives = 98/175 (56.00%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSK-------EGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFA 505
            GYEV+  TDPVDE  ++ + +++ K  Q+V+K       E  K  ++T+ ++ ++ F ++  W    L  ++V +V++S RL ++P  ++T  +G +  + R+ +      AS Q     KR+LE+NP HP++  LRE       D  +  TA+L+Y TAL+  G +L DP  FA
Sbjct:  469 GYEVLLLTDPVDEVWVESIHEFDGKPLQSVAKGEVDLDSEADKEAQETERQQREKEFADVIAWLTEVLG-DHVKEVRLSTRLTDSPACLITDTFGITPALARMYR------ASGQPVPVEKRILELNPTHPLVVGLREAHESRGADDELAGTAELLYGTALLAEGGALEDPARFA 636          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_LEGPL (Chaperone protein htpG OS=Legionella pneumophila (strain Lens) GN=htpG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.634e-19
Identity = 58/180 (32.22%), Postives = 100/180 (55.56%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWK--GALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSS 535
            G EV+  +D VDE+L+ Y+ ++  KK Q++SK  ++LG D   +++KE  K L    K   ++ +E V DV ++NRL ++P  VV  +      M+RI+Q      A+ Q     K + EINP H +IK L +  ++D  D   +    ++++ A++  G  L++P DF +R+   + SS
Sbjct:  454 GIEVLLLSDKVDEWLVGYMNEFTGKKLQSISKGKVELGDDETSEQIKEQEKTLEPLIKHIKSVLNERVKDVLLTNRLTDSPACVVADEQDMGLEMQRILQ------AAGQQIPVSKPIFEINPEHALIKRLHD--IQD--DNQFELWVTMLFEQAVLAEGGQLDNPADFVNRVNRLLVSS 623          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_GEOMG (Chaperone protein htpG OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=htpG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.634e-19
Identity = 55/173 (31.79%), Postives = 97/173 (56.07%), Query Frame = 2
Query:    5 YEVIFFTDPVDEYLMQYLMDYEDKKFQNVSK-------EGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDF 502
            YEV+F TDPVDE+++Q + +Y+ KK + V +       E  K  ++ K +E  + + +L  + K  L +  V +V++S+RL ++ C +V  ++G +ANMERI++      A  Q     KR+LE+NP HP+++ +     +D  +  +     L+Y  AL+  G  ++DP  F
Sbjct:  467 YEVLFLTDPVDEWVVQGVTEYDGKKLKAVDRGDVIPATEEEKKEQEAKREEAFKQYGDLLSFVKEKLDAR-VKEVRLSSRLTDSACCLVADEHGLNANMERILR------AMNQDVPESKRILELNPDHPLMQVMANLFARDKANPRLGDYCDLLYDQALLTEGSPISDPLRF 632          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_LEGPC (Chaperone protein htpG OS=Legionella pneumophila (strain Corby) GN=htpG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.358e-19
Identity = 58/180 (32.22%), Postives = 100/180 (55.56%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWK--GALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSS 535
            G EV+  +D VDE+L+ Y+ ++  KK Q++SK  ++LG D   +++KE  K L    K   ++ +E V DV ++NRL ++P  VV  +      M+RI+Q      A+ Q     K + EINP H +IK L +  ++D  D   +    ++++ A++  G  L++P DF +R+   + SS
Sbjct:  454 GIEVLLLSDKVDEWLVGYMNEFAGKKLQSISKGKIELGDDETSEQIKEQEKTLEPLIKHIKSVLNERVKDVLLTNRLTDSPACVVADEQDMGLEMQRILQ------AAGQQVPVSKPIFEINPDHALIKRLHD--IQD--DNQFELWVTMLFEQAVLAEGGQLDNPADFVNRVNRLLVSS 623          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_LEGPH (Chaperone protein htpG OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=htpG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.610e-19
Identity = 58/180 (32.22%), Postives = 100/180 (55.56%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWK--GALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSS 535
            G EV+  +D VDE+L+ Y+ ++  KK Q++SK  ++LG D   +++KE  K L    K   ++ +E V DV ++NRL ++P  VV  +      M+RI+Q      A+ Q     K + EINP H +IK L +  ++D  D   +    ++++ A++  G  L++P DF +R+   + SS
Sbjct:  454 GIEVLLLSDKVDEWLVGYMNEFAGKKLQSISKGKVELGDDETSEQIKEQEKTLEPLIKHIKSVLNERVKDVLLTNRLTDSPACVVADEQDMGLEMQRILQ------AAGQQVPVSKPIFEINPDHALIKRLHD--IQD--DNQFELWVTMLFEQAVLAEGGQLDNPADFVNRVNRLLVSS 623          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_CLOB6 (Chaperone protein htpG OS=Clostridium botulinum (strain 657 / Type Ba4) GN=htpG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.610e-19
Identity = 61/186 (32.80%), Postives = 98/186 (52.69%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVS----------KEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVK 529
            GYEV++FTD +DE+ ++ LM+Y++K+F++VS          KE      D K+KEL ES K+        + S  V DV+ S RL N P V + ++   S  ME+++ +           ++  +VLEIN  H + K L+E    D E   ++    L+Y  AL+  G ++NDP +F + I   +K
Sbjct:  457 GYEVLYFTDDIDEFAIKMLMNYKEKEFKSVSSGDLGIEGEEKENTSNSDDKKNKELFESMKD--------ILSGKVKDVRASKRLKNHP-VCLANEGELSIEMEKVLNAM-----PNNQNIKADKVLEININHDVFKSLKEAYEGDKEK--LKLYTDLLYNQALLIEGLAINDPVEFTNNICKIMK 626          
BLAST of CK933992 vs. ExPASy Swiss-Prot
Match: HTPG_THIDA (Chaperone protein htpG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=htpG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18
Identity = 61/177 (34.46%), Postives = 99/177 (55.93%), Query Frame = 2
Query:    2 GYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK------DTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRI 514
            G EV+  +D VDE+L   L +++ K  ++V+K GL LG+       T  KE +ES K L +  K A+  E V DV+V++RL ++P  +VT +   SAN+ER+++      A+ QA    K  LEINP H ++     R+  + ++   +  A L+++ AL+  G  L+DP  F  R+
Sbjct:  459 GIEVLLLSDRVDEWLTGNLHEFDGKPLKSVAKGGLDLGELEDEAEKTAQKEAEESMKPLVERIK-AMLGERVKDVRVTHRLTDSPACLVTGEGDMSANLERLLK------AAGQAAPTVKPTLEINPSHALV----TRLDSESDEDRFKDWANLLFEQALLAEGGQLDDPASFVRRL 624          
The following BLAST results are available for this feature:
BLAST of CK933992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
HTPG_MYCLE5.096e-2032.28Chaperone protein htpG OS=Mycobacterium leprae GN=... [more]
HTPG_BDEBA1.135e-1934.44Chaperone protein htpG OS=Bdellovibrio bacteriovor... [more]
HTPG_SACD21.483e-1931.07Chaperone protein htpG OS=Saccharophagus degradans... [more]
HTPG_MYCGI2.529e-1932.57Chaperone protein htpG OS=Mycobacterium gilvum (st... [more]
HTPG_LEGPL5.634e-1932.22Chaperone protein htpG OS=Legionella pneumophila (... [more]
HTPG_GEOMG5.634e-1931.79Chaperone protein htpG OS=Geobacter metallireducen... [more]
HTPG_LEGPC7.358e-1932.22Chaperone protein htpG OS=Legionella pneumophila (... [more]
HTPG_LEGPH9.610e-1932.22Chaperone protein htpG OS=Legionella pneumophila s... [more]
HTPG_CLOB69.610e-1932.80Chaperone protein htpG OS=Clostridium botulinum (s... [more]
HTPG_THIDA1.255e-1834.46Chaperone protein htpG OS=Thiobacillus denitrifica... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933992 ID=CK933992; Name=CK933992; organism=Citrus sinensis; type=EST; length=894bp
GGGCTATGAGGTGATTTTCTTCACTGATCCAGTTGATGAATACCTGATGC
AATACCTGATGGATTATGAAGACAAAAAGTTCCAAAATGTATCTAAAGAG
GGTCTTAAACTTGGTAAAGACACTAAAGATAAGGAACTTAAGGAGTCATT
CAAGGAGCTCACGAAATGGTGGAAGGGTGCTCTTGCCAGCGAGAACGTGG
ATGATGTGAAAGTAAGCAACCGCTTGGATAACACCCCTTGCGTAGTTGTG
ACATCAAAGTATGGTTGGAGTGCGAATATGGAGAGGATCATGCAGTCTCA
GACTCTCTCAGATGCTAGCAAGCAAGCATATATGCGGGGCAAGAGGGTGC
TTGAAATCAATCCAAGGCATCCAATCATCAAAGAGCTCCGGGAGAGAGTC
GTCAAGGACCCTGAGGATGCGGGTGTCCAGCAAACAGCCCAACTCATTTA
CCAGACGGCACTCATGGAGAGTGGCTTTTCGCTCAATGATCCCAAGGATT
TTGCCTCCCGAATTTACAGCACGGTGAAATCTAGCCTTAACATTAGCCCT
GATGCAGCTGTTGAGGAGGAAGATGATGTAGAAGAGACTGATGCTGACAC
TGAAATGAAAGAATCTTCGGCTGCCAAAGAGGACGTGGATACAGAGTATT
CTGGCAAGGATGAGTTGTAGATTGCCTAATAAAAGCATGGGCAACAACAT
CCCAGTTTCTTAGGAAAGCATAAACGCTCTGCATAGTGCGTTCATTTCCA
GTTTTGAAAACTTTGGTGAAAAAACGTTTTAGATCTTAGATTCAATGTAA
CCATAATCACCGGGAATTTTGTCTTTTAACAGTTGACACTATCAATTATG
GATGAATCAGCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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