CK933995

Overview
NameCK933995
Unique NameCK933995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:71..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.968e-46
Identity = 89/149 (59.73%), Postives = 112/149 (75.17%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 505
            M++TF+M+KPDGVQRGLVGE+I RFE++GF L  LKL+ +DR  AE+HYE+   KPFF  L+ YITSGPV AM+ EG  VV T R ++GAT PA++ PGTIRG   I  GRNI+HGSDS  SA +EI L+F DG  I ++ +L PWIYE
Sbjct:    1 MDRTFVMVKPDGVQRGLVGEVITRFERRGFKLVALKLLWIDRGLAERHYEEHRGKPFFDELVRYITSGPVAAMVLEGREVVTTVREMMGATQPAKALPGTIRGTYGIDVGRNIVHGSDSAASAAREIGLFFADGELIEYERALDPWIYE 149          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.968e-46
Identity = 89/148 (60.14%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   65 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 505
            E+TFI IKPDGVQRGL+G+II RFE+KGF L  +K     +    +HY DL  +PF+  L+EY++SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA KEIALWF D   +  +S  + W+YE
Sbjct:    6 ERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESANKEIALWFKDEELVENKSCAYEWVYE 153          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.571e-46
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 505
            ME+TFI IKPDGVQRGLVG II R E +G+ L GLKL+ V +  AE HY +   +PFF SL+++ITSGPVVAM+W+G+GV+   R +IG TNP ++ PGTIRGD  I  GRN+IHGSD VE+AQ+EIALWF +   ++W      WIYE
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHKERPFFHSLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLEAEPGTIRGDFGIDIGRNLIHGSDGVETAQREIALWFDESELVSWTPVAQSWIYE 149          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.571e-46
Identity = 89/148 (60.14%), Postives = 110/148 (74.32%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 502
            ME+TF+MIKPDGV RGL+GEI+ R E KG  + G KLMTV    A+ HY + S KPFFG L+E+ITSGPV AM+ EG+ VV+ GRT++G TNPA+SAPGTIRGD  +  G+NIIHGSDSV SA KEIALWF +  I ++      W+Y
Sbjct:    1 MEKTFLMIKPDGVGRGLIGEIVKRIENKGIKVVGAKLMTVSEDLAKTHYGEHSEKPFFGELVEFITSGPVFAMVLEGDNVVEIGRTLVGKTNPAESAPGTIRGDFGMTVGKNIIHGSDSVASADKEIALWFKEEEILSYDLVTSAWVY 148          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 88/149 (59.06%), Postives = 112/149 (75.17%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 505
            ME+T++MIKPDGVQRGLVGEII RFEKKGF L G+K + + R  AEKHY +   KPFF  L++YI SGPVVAM WEG+ +V   R ++GATNPA++APGTIRG  A+  GRNIIHGSDS  SA++E+A++F  D  + W  +L  W+ E
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPVVAMCWEGKDIVSVSREMMGATNPAKAAPGTIRGTYAVDIGRNIIHGSDSPASAERELAIYFQSDELVEWDRTLQGWLTE 149          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.385e-46
Identity = 81/147 (55.10%), Postives = 115/147 (78.23%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 499
            ME+T++M+KPDGVQR L+G I+ RFE+KG++L   KL+T+ +  AE HY +   +PFFG L+ +ITSGPV AM+WEGEGV+K  R +IGATNP+++APGTIRGDLA+  G N++HGSDS ESA++EIA++F +  +N +Q   + W+
Sbjct:    1 MERTYVMVKPDGVQRNLIGNIVSRFEQKGYTLAAAKLVTLSKETAETHYSEHRERPFFGELVSFITSGPVFAMVWEGEGVIKAARQLIGATNPSEAAPGTIRGDLAVNVGMNVVHGSDSPESAEREIAIFFKEEELNDYQKDSNKWV 147          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.480e-46
Identity = 83/149 (55.70%), Postives = 114/149 (76.51%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 505
            ME+TF+M+KPDGVQRGLVGE+I R E+KG  +  +K++ + R  AE HY +   KPFF +L++YITSGPVVAM+ EG+  +K  RT++GATNPA++APGTIRGD  +  GRN++H SDS +SA++EI+L+F D  I NW+ +   WIYE
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAAPGTIRGDFGLDVGRNVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYE 149          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.769e-46
Identity = 85/149 (57.05%), Postives = 108/149 (72.48%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 505
            ME+TFI IKPDGVQRGLVG II R E +G+ L GLKL+ V +  AE HY +   +PFF  L+++ITSGPVVAM+W+G+GV+   R +IG TNP  + PGTIRGD  I  GRN++HGSD  E+AQ+EIALWF +   +NW  +   WIYE
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLDAEPGTIRGDFGIDIGRNLVHGSDGPETAQREIALWFQESELVNWTPATQSWIYE 149          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.769e-46
Identity = 81/147 (55.10%), Postives = 112/147 (76.19%), Query Frame = 2
Query:   65 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 502
            E+TFIM+KPDGVQR L+GEI+ RFEKKGF L G KLM V R  AE+HY +   +PFFG L+++ITSGPV AM+WEGE V+   R ++G TNP ++APGTIRGD  +  G+N+IHGSDS +SA++EI+L+F +   +++   ++ W+Y
Sbjct:    3 ERTFIMVKPDGVQRNLIGEIVARFEKKGFQLVGAKLMQVSRELAEQHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIAAARQMMGKTNPQEAAPGTIRGDFGLTVGKNVIHGSDSPQSAKREISLFFKEEELVSYSKQINAWLY 149          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 9.769e-46
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 2
Query:   65 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 505
            E+TF+ +KPDGVQR LVGEI+ RFE+KGF L  LKL+        +HY +L  +PF+G L++Y+ SGPVVAM+W+G  VV+T R +IGATNPA + PGTIRGD  I  G+N+IHGSDSVESA++EIALWF  D  + W+ S   W+YE
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
The following BLAST results are available for this feature:
BLAST of CK933995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_DESAP1.968e-4659.73Nucleoside diphosphate kinase OS=Desulforudis auda... [more]
NDKA1_XENLA1.968e-4660.14Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]
NDK_SYNJB2.571e-4658.39Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_MACCJ2.571e-4660.14Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]
NDK_HELMI3.358e-4659.06Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_BACSK4.385e-4655.10Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]
NDK_ARCFU7.480e-4655.70Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK_SYNJA9.769e-4657.05Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_GEOKA9.769e-4655.10Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDK3_HUMAN9.769e-4657.43Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004542_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933995 ID=CK933995; Name=CK933995; organism=Citrus sinensis; type=EST; length=673bp
GGGGTGCTGTGCTATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGA
ATCTCAAAGAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTC
CAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTT
CTCTTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGA
AGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAG
TACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGT
TGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTG
CTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATT
ATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTG
GTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCT
ATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGA
CTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTG
GTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATCCTGGGCAAAA
AAAAAAAAAAAAAAAAAAAAAAA
back to top