CK933997 | Citrus Genome Database

Overview


Name	CK933997
Unique Name	CK933997
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	749

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROAC (60S ribosomal protein L32 OS=Drosophila acanthoptera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.882e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 59.3066 bits (142), Expect = 3.882e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+ +RKEIVERA QL + +TN  ARLRSQE+E
Sbjct:   91 NREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROYA (60S ribosomal protein L32 OS=Drosophila yakuba GN=RpL32 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.057e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.9214 bits (141), Expect = 5.057e-35
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL + +TN   RLRSQE+E
Sbjct:   91 NRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROSI (60S ribosomal protein L32 OS=Drosophila simulans GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.057e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.9214 bits (141), Expect = 5.057e-35
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL + +TN   RLRSQE+E
Sbjct:   91 NRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROPS (60S ribosomal protein L32 OS=Drosophila pseudoobscura pseudoobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.057e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.9214 bits (141), Expect = 5.057e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROPE (60S ribosomal protein L32 OS=Drosophila persimilis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.057e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.9214 bits (141), Expect = 5.057e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROMI (60S ribosomal protein L32 OS=Drosophila miranda GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.057e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.9214 bits (141), Expect = 5.057e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROME (60S ribosomal protein L32 OS=Drosophila melanogaster GN=RpL32 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 5.057e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.9214 bits (141), Expect = 5.057e-35
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL + +TN   RLRSQE+E
Sbjct:   91 NRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROAZ (60S ribosomal protein L32 OS=Drosophila azteca GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.057e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.9214 bits (141), Expect = 5.057e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROAI (60S ribosomal protein L32 OS=Drosophila affinis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.057e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.9214 bits (141), Expect = 5.057e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROSU (60S ribosomal protein L32 OS=Drosophila subobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.587e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.5362 bits (140), Expect = 6.587e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

The following BLAST results are available for this feature:

BLAST of CK933997 vs. ExPASy Swiss-Prot

BLAST of CK933997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36


Match Name	E-value	Identity	Description
RL32_DROAC	3.882e-35	68.06	60S ribosomal protein L32 OS=Drosophila acanthopte...	[more]
RL32_DROYA	5.057e-35	68.06	60S ribosomal protein L32 OS=Drosophila yakuba GN=...	[more]
RL32_DROSI	5.057e-35	68.06	60S ribosomal protein L32 OS=Drosophila simulans G...	[more]
RL32_DROPS	5.057e-35	68.06	60S ribosomal protein L32 OS=Drosophila pseudoobsc...	[more]
RL32_DROPE	5.057e-35	68.06	60S ribosomal protein L32 OS=Drosophila persimilis...	[more]
RL32_DROMI	5.057e-35	68.06	60S ribosomal protein L32 OS=Drosophila miranda GN...	[more]
RL32_DROME	5.057e-35	68.06	60S ribosomal protein L32 OS=Drosophila melanogast...	[more]
RL32_DROAZ	5.057e-35	68.06	60S ribosomal protein L32 OS=Drosophila azteca GN=...	[more]
RL32_DROAI	5.057e-35	68.06	60S ribosomal protein L32 OS=Drosophila affinis GN...	[more]
RL32_DROSU	6.587e-35	68.06	60S ribosomal protein L32 OS=Drosophila subobscura...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004542_F01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK933997 ID=CK933997; Name=CK933997; organism=Citrus sinensis; type=EST; length=749bp
GGGGCTCGCGGCCAAGCTGAACCCTAGCTCAAATCACTGGGAAGAAGGTA
AGGAAGATGGCGGTTCCGTTACTGTCGAAGAAGATAGTGAAGAAGAGGCT
GAAGAAGTTCAAGAGGCCTCAGAGCGATCGCAAGATCTCCGTCAAGGAAA
ATTGGCGCAGACCAAAGGGTATTGATTCCCGGGTGCGAAGAAAGTTCAAG
GGATGCACTCTAATGCCCAACATTGGTTATGGTTCGGACAAGAAGACACG
CCACTATCTTCCAAATGGTTTCAAGAAATTTGTGGTGCACAATACGAAAG
AGCTTGAATTGTTGATGATGCACAACAGGTAGCATTTCTTTTGTAATTCC
TGGAAGTTGCATTAATGCCTCCTGAAATTGTTTTGCCTTTTGTTTGTTGA
TTCCAACCCAATATTTTTATCATAGGACCTACTGTGCTGAAATTGCCCAT
GATGTTTCCACGAGGGAGAGGAAAGAGATTGTGGAGCGAGCTGCCCAACT
TGATATTGTTGTGACTAACAAGCTTGCTAGATTGAGAAGCCAGGAAGATG
AATGAGATTAAACAATCTGTTCTTTTTAGTAGTAGTGAGTCTTGTTTTGT
ACGCTTTATCAAAATTTTGAAAATTTTGACTTACAAAGATACGACCGTTT
GTGATTTTTTATTTTTTTTGGGATGAGTGATAATACAGTAGTTTTTATTT
CATAAAAATATTATTATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA