CK933997 | Citrus Genome Database

Overview


Name	CK933997
Unique Name	CK933997
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	749

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.587e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.5362 bits (140), Expect = 6.587e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.587e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.5362 bits (140), Expect = 6.587e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.587e-35
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHN +ELE+L+M NR
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNR 92

HSP 2 Score: 58.5362 bits (140), Expect = 6.587e-35
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH VS+++RKEIVERA QL I +TN   RLRSQE+E
Sbjct:   91 NRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.118e-34
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   +K NWR+PKGID+RVRR+FKG  LMPNIGYGS+KKTRH LP GF+K +VHN KELE+LMM NR
Sbjct:   21 RHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNR 92

HSP 2 Score: 54.299 bits (129), Expect = 1.118e-34
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R +CAEIAH  S+++RK IVERA QL I VT   ARLRSQE+E
Sbjct:   91 NRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 4.035e-31
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGY S+KKT+H L +GF+KF+VHN KE E+L+M N+
Sbjct:   22 RHQSDRYVKIKWNWRKPRGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNK 93

HSP 2 Score: 52.7582 bits (125), Expect = 4.035e-31
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +++Y AEIAH+VS++ RK IVERAAQL I VTN   RL S+E+E
Sbjct:   92 NKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.346e-28
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR + V   WR+PKGID+RVRR+F+G   MP+IGYGS+KKTRH +P+G K F+V N K++ELL+MHN+
Sbjct:   20 RHQSDRFMRVDSAWRKPKGIDNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNK 91

HSP 2 Score: 46.9802 bits (110), Expect = 1.346e-28
Identity = 21/42 (50.00%), Postives = 33/42 (78.57%), Query Frame = 1

Query:  418 YHRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQ 543
            +++TY AEIAH+VS+R+R EI+ RA QL + VTN  A++ ++
Sbjct:   89 HNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.166e-27
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSDR   V E+WR+P+GIDS VRR+F+G   MP IGYG++KKTR+ +PNG K F+V N  ++ELL+MHN+
Sbjct:   16 RHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNK 87

HSP 2 Score: 47.7506 bits (112), Expect = 4.166e-27
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1

Query:  418 YHRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQE 546
            +++TY AEIA +VS R+R EIVE+A  L + VTN  A++RSQE
Sbjct:   85 HNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.028e-26
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSD    V E+WR+P+GIDS VRR+F+G   MP IGYG++KKTR+ +PNG K F+V N  ++ELL+MHN+
Sbjct:   16 RHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNK 87

HSP 2 Score: 48.1358 bits (113), Expect = 2.028e-26
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1

Query:  418 YHRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQE 546
            +++TY AEIA +VS R+R EIVE+A  L + VTN  A++RSQE
Sbjct:   85 HNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.055e-24
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R QSD    V  +WR+P+GID+RVRR+F G   MP+IG+GS K T+   P+GFK+FV+ N +ELE+L+M NR
Sbjct:   20 RFQSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNR 91

HSP 2 Score: 48.521 bits (114), Expect = 1.055e-24
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R Y A I H VS + RK IVERAA+L+I VT   ARLRS+E E
Sbjct:   90 NRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133

[Close]

BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_ASHGO (60S ribosomal protein L32 OS=Ashbya gossypii GN=RPL32 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.832e-21
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 3

Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KKTR   P+G K ++V N K+LE+LMMH +
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGQISEPTIGYGSNKKTRFMTPSGHKTYLVSNIKDLEVLMMHTK 91

HSP 2 Score: 36.1946 bits (82), Expect = 4.832e-21
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 1

Query:  424 RTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARL 534
            +TY AEIA +VS++ R  I+ RA  L I VTN   RL
Sbjct:   91 KTYAAEIASNVSSKNRVSILARAKALGIKVTNPKGRL 127

The following BLAST results are available for this feature:

BLAST of CK933997 vs. ExPASy Swiss-Prot

BLAST of CK933997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36


Match Name	E-value	Identity	Description
RL32_DROMD	6.587e-35	68.06	60S ribosomal protein L32 OS=Drosophila madeirensi...	[more]
RL32_DROGU	6.587e-35	68.06	60S ribosomal protein L32 OS=Drosophila guanche GN...	[more]
RL32_DROBF	6.587e-35	68.06	60S ribosomal protein L32 OS=Drosophila bifasciata...	[more]
RL32_APIME	1.118e-34	72.22	60S ribosomal protein L32 OS=Apis mellifera GN=RpL...	[more]
RL32P_MOUSE	4.035e-31	63.89	Putative 60S ribosomal protein L32' OS=Mus musculu...	[more]
RL32_NEUCR	1.346e-28	61.11	60S ribosomal protein L32 OS=Neurospora crassa GN=...	[more]
RL32A_SCHPO	4.166e-27	58.33	60S ribosomal protein L32-A OS=Schizosaccharomyces...	[more]
RL32B_SCHPO	2.028e-26	56.94	60S ribosomal protein L32-B OS=Schizosaccharomyces...	[more]
RL32_DICDI	1.055e-24	54.17	60S ribosomal protein L32 OS=Dictyostelium discoid...	[more]
RL32_ASHGO	4.832e-21	56.94	60S ribosomal protein L32 OS=Ashbya gossypii GN=RP...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004542_F01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK933997 ID=CK933997; Name=CK933997; organism=Citrus sinensis; type=EST; length=749bp
GGGGCTCGCGGCCAAGCTGAACCCTAGCTCAAATCACTGGGAAGAAGGTA
AGGAAGATGGCGGTTCCGTTACTGTCGAAGAAGATAGTGAAGAAGAGGCT
GAAGAAGTTCAAGAGGCCTCAGAGCGATCGCAAGATCTCCGTCAAGGAAA
ATTGGCGCAGACCAAAGGGTATTGATTCCCGGGTGCGAAGAAAGTTCAAG
GGATGCACTCTAATGCCCAACATTGGTTATGGTTCGGACAAGAAGACACG
CCACTATCTTCCAAATGGTTTCAAGAAATTTGTGGTGCACAATACGAAAG
AGCTTGAATTGTTGATGATGCACAACAGGTAGCATTTCTTTTGTAATTCC
TGGAAGTTGCATTAATGCCTCCTGAAATTGTTTTGCCTTTTGTTTGTTGA
TTCCAACCCAATATTTTTATCATAGGACCTACTGTGCTGAAATTGCCCAT
GATGTTTCCACGAGGGAGAGGAAAGAGATTGTGGAGCGAGCTGCCCAACT
TGATATTGTTGTGACTAACAAGCTTGCTAGATTGAGAAGCCAGGAAGATG
AATGAGATTAAACAATCTGTTCTTTTTAGTAGTAGTGAGTCTTGTTTTGT
ACGCTTTATCAAAATTTTGAAAATTTTGACTTACAAAGATACGACCGTTT
GTGATTTTTTATTTTTTTTGGGATGAGTGATAATACAGTAGTTTTTATTT
CATAAAAATATTATTATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA