CK933997

Overview
NameCK933997
Unique NameCK933997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.832e-21
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KKT+   P+G K F+V N K+LE L MH +
Sbjct:   19 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTK 90          

HSP 2 Score: 38.891 bits (89), Expect = 4.832e-21
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 1
Query:  400 IPTQYFYHRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARL 534
            + T   + +TY AEIAH++S + R  I+ RA  L I VTN   RL
Sbjct:   82 LETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.178e-21
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R  SDR   V ENWR+ KGIDS VRR+F+G    PNIGYGS+KKT+   P G+K ++V N K+L++L++H +
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTK 91          

HSP 2 Score: 36.965 bits (84), Expect = 8.178e-21
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 1
Query:  424 RTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARL 534
            ++Y AEIA  VS+R+R EIV +A +L + VTN   +L
Sbjct:   91 KSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.477e-19
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR 329
            R  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KKT+   P+G K  +V N K+LE L MH +
Sbjct:   20 RHHSDRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTK 91          

HSP 2 Score: 37.3502 bits (85), Expect = 1.477e-19
Identity = 18/45 (40.00%), Postives = 28/45 (62.22%), Query Frame = 1
Query:  400 IPTQYFYHRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARL 534
            + T   + ++Y AEIAH+VS++ R  ++ RA  L + VTN   RL
Sbjct:   83 LETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.664e-17
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR*HFFC 344
            R  SDR   VK +WRRP GIDS+VR++ KG   MP+I Y   K+ RH LPNG +K  + N  +L  L   NR  F+C
Sbjct:   26 RHHSDRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNR--FYC 100          

HSP 2 Score: 39.2762 bits (90), Expect = 1.664e-17
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 1
Query:  421 HRTYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            +R YC EIAH V  R+R  IV RA +L I + N  ARL  + +E
Sbjct:   96 NRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  114 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKEL 305
            R QSDR   V  +WR+PKGID RVRR+F+G   MP IGYGS+KKTR   P+G   F +HN + L
Sbjct:   20 RHQSDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTL 82          
BLAST of CK933997 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1
Query:  427 TYCAEIAHDVSTRERKEIVERAAQLDIVVTNKLARLRSQEDE 552
            TYCAEIAH+VST++RKEIVERAAQLDIVV  KLAR  SQEDE
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
The following BLAST results are available for this feature:
BLAST of CK933997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL32_YEAST4.832e-2155.5660S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL8.178e-2152.7860S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA1.477e-1954.1760S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU1.664e-1748.0560S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_TRIHA1.320e-1256.2560S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_MAIZE1.460e-1183.3360S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_F01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933997 ID=CK933997; Name=CK933997; organism=Citrus sinensis; type=EST; length=749bp
GGGGCTCGCGGCCAAGCTGAACCCTAGCTCAAATCACTGGGAAGAAGGTA
AGGAAGATGGCGGTTCCGTTACTGTCGAAGAAGATAGTGAAGAAGAGGCT
GAAGAAGTTCAAGAGGCCTCAGAGCGATCGCAAGATCTCCGTCAAGGAAA
ATTGGCGCAGACCAAAGGGTATTGATTCCCGGGTGCGAAGAAAGTTCAAG
GGATGCACTCTAATGCCCAACATTGGTTATGGTTCGGACAAGAAGACACG
CCACTATCTTCCAAATGGTTTCAAGAAATTTGTGGTGCACAATACGAAAG
AGCTTGAATTGTTGATGATGCACAACAGGTAGCATTTCTTTTGTAATTCC
TGGAAGTTGCATTAATGCCTCCTGAAATTGTTTTGCCTTTTGTTTGTTGA
TTCCAACCCAATATTTTTATCATAGGACCTACTGTGCTGAAATTGCCCAT
GATGTTTCCACGAGGGAGAGGAAAGAGATTGTGGAGCGAGCTGCCCAACT
TGATATTGTTGTGACTAACAAGCTTGCTAGATTGAGAAGCCAGGAAGATG
AATGAGATTAAACAATCTGTTCTTTTTAGTAGTAGTGAGTCTTGTTTTGT
ACGCTTTATCAAAATTTTGAAAATTTTGACTTACAAAGATACGACCGTTT
GTGATTTTTTATTTTTTTTGGGATGAGTGATAATACAGTAGTTTTTATTT
CATAAAAATATTATTATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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