CK933999

Overview
NameCK933999
Unique NameCK933999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933999_ssr49 microsatellite CK933999_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10573 contig Csv1_Contig10573:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933999 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.577e-11
Identity = 56/190 (29.47%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  100 LILLAIFSYLNSS-SASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARH-ASLIQTSPKLLAHASLNVTL-----AMAKSMSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNG--KVVRAQIVKIAHMTSNALALINS 642
            ++  AIF+ + S    ++  P       + I  +C  T +P LC  SL     SL  +S K L H ++N+TL     A+  S S   + M       PR   A   C+E L DSVD L +++  +    A        D+ TW+SAALT+  TC++GF+     G    + A +  ++ + SN LA+ ++
Sbjct:   57 ILAAAIFAGVRSRLKLNQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLSFVDMP------PRARSAYDSCVELLDDSVDALSRALSSVVSSSAKP-----QDVTTWLSAALTNHDTCTEGFDGVDDGGVKDHMTAALQNLSELVSNCLAIFSA 235          
BLAST of CK933999 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 49/182 (26.92%), Postives = 81/182 (44.51%), Query Frame = 1
Query:  133 SSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSMSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSIGEMGLIKAS-NFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKI-------AHMTSNALALINSYASL 654
            SS +S   P    +    +K  C +T YP+ C+ S++       T P+LL   SL V +     +S+   K+  +     R   A+  C     D++D L  SI  +G +        ++S+++TW+SAALTD+ TC D      +N    R  + +I           SN+LA++     L
Sbjct:   59 SSPSSDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAI---DELSSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAV--GELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGL 235          
The following BLAST results are available for this feature:
BLAST of CK933999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PME34_ARATH2.577e-1129.47Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_PHAVU4.395e-1126.92Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_F03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933999 ID=CK933999; Name=CK933999; organism=Citrus sinensis; type=EST; length=901bp
GGGGACATAACTNNNTCCTCACTTCATTTGCTCATAATTTCAAAGGTCAG
AGAGAGAGACATGGAAGGTTCATCCTCAAATCATATGCTTAAATACTTTC
TCATTTTACTAGCCATTTTTTCCTACTTAAATTCAAGCTCAGCCTCTAGA
CATGGCCCCTCTAAAATTGCTGCTGACAGAAGGTTCATCAAAACATCTTG
CAGTTCAACAACTTATCCAACACTTTGCTATAAATCCCTTGCTAGACATG
CAAGCTTAATCCAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTCAAC
GTGACCCTTGCAATGGCTAAATCAATGTCAGCCGTCATGTTAAAGATGTC
GAAAAGCCCTGGAATGAAGCCTAGAGAGGTGGATGCCATGCAAGATTGTT
TGGAGGAGCTGAGTGATTCAGTTGATGAGCTCAGAAAGTCCATTGGCGAA
ATGGGTCTGATCAAAGCTTCAAATTTTGAACTTACAATGAGTGATATACA
GACTTGGGTTAGTGCTGCTTTGACTGATGAGACTACTTGCAGCGATGGAT
TTGAGAAGAATACGGTGAATGGGAAAGTTGTGAGGGCCCAGATTGTGAAG
ATTGCTCATATGACTAGCAATGCCTTGGCTTTGATCAATAGTTATGCTTC
TCTTCGCGGTTAGATATTCTCATGATTAGCTCCATTATTGTAAGTGATTT
ATGCAGTATTAATCCTGCCTGTGGAGATCAGATTTATGAAAATGTAATCT
TTATTGCAAGCAAATAGCAGATCCAGAAAAAAAAAGTTGGATTTATCTAT
TTTCCTTTTCTGTTAGGGATGTCGAAGAAGCGTTGGCAAATGGCTTTGTA
AATGTAAATTTGTACTATATAGTAATTAAAAAAAAAAAAAAAAAAAAAAA
A
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