CK934000

Overview
NameCK934000
Unique NameCK934000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM----GKNMCGIATCASYPV 382
            YTG +G C  + EN  V  +DS  N+    E  LQ AV   +PVSV  +     F+ Y++G+++    G+  +  NH     G   E+   YW +KNSWG+NWG+ GY ++E         CGIA   SYP+
Sbjct:   91 YTGTNGTCD-TKENAHVVSIDSYRNVPSNDEKSLQKAVAN-QPVSVTMDAAGRDFQLYRNGIFT----GSCNISANHYRTVGGRETENDKDYWTVKNSWGKNWGESGYIRVERNIAESSGKCGIAISPSYPI 216          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 385
            Y  K+  C   ++ V V +  SVN+T   +DE + A  L     +SV    +   +FY+ G+        +   ++HAV+ VGYGV E   P+W++KNSWG  WG++GYF+M  G   CGI T A+  ++
Sbjct:  193 YDAKNEKCHLKTDGVAVYINSSVNLT---QDETELAAWLYHNSTISVGMNALL-LQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATSAMI 318          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            PV  AF V   F  YKSGVY   + G+  M   HA+  +G+GVE+GVPYWL  NSW  +WGD+G+FK+  G+N CGI
Sbjct:  248 PVEGAFTVFSDFLTYKSGVYKH-EAGD--MMGGHAIRILGWGVENGVPYWLAANSWNLDWGDNGFFKILRGENHCGI 321          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.000e-14
Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGF-RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMG---KNMCGIATCAS 373
            YTG DG CKF    +   V    N ++ + DE Q +  L++   +A  +   + + Y  GV     CG     ++H V+ VGYG     P       YW+IKNSWGENWG++GY+K+  G   +N CG+ +  S
Sbjct:  234 YTGSDGKCKFDKSKIVASVQ---NFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGR---HLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVS 361          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 2
Query:   92 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            E E+   +    PV  AF V   F  YKSGVY      +  +   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  236 EKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---SGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 2
Query:    5 YTGKDG-VCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGF-RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 373
            YTGKDG  CK     +   V    N ++ + DE Q A  LV+   +A  +  G+ + Y  GV     C      +NH V+ VGYG     P       YW+IKNSWGE WG++G++K+  G+N+CG+ +  S
Sbjct:  232 YTGKDGKTCKLDKSKIVASVS---NFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRR---LNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVS 357          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 41/141 (29.08%), Postives = 70/141 (49.65%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPVVA*SAPEEIV 412
            Y    G C  +S      +     +    E  + +AV   +P++   +  + F++Y  GV+S   CG +   +NHA+  +GYG +  G  YW+++NSWG +WG+ GY +M  G      +CGIA    +P +   A  E++
Sbjct:  210 YLAYQGTCNANSFPNSAYITGYSYVRRNDERSMMYAVSN-QPIAALIDASENFQYYNGGVFSGP-CGTS---LNHAITIIGYGQDSSGTKYWIVRNSWGSSWGEGGYVRMARGVSSSSGVCGIAMAPLFPTLQSGANAEVI 345          
The following BLAST results are available for this feature:
BLAST of CK934000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CPGP1_ZINOF7.658e-1536.36Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CATL_SCHMA7.658e-1535.38Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATB_PONAB7.658e-1548.05Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_MOUSE7.658e-1551.95Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_MACFA7.658e-1548.05Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_HUMAN7.658e-1548.05Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CYSP1_MAIZE1.000e-1435.07Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CATB_BOVIN1.706e-1442.70Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
RD19A_ARATH2.228e-1436.36Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
BROM1_ANACO2.228e-1429.08Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934000 ID=CK934000; Name=CK934000; organism=Citrus sinensis; type=EST; length=720bp
GGGCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTG
GCGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAA
TTACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGT
AGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAAT
GTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCTGTTGGGTAC
GGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTCTTGGGGAGA
GAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGAAGAACATGT
GTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAGTCTGCTCCT
GAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTCATAAAACTT
ATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTTATGTACGAA
ATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAATGCATGGCT
GCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTAAACAGTCAT
TGTGACTAGGACACCAACGATGTTATATATATTTTGTCAATGCAAGGTAG
TTGTTATATGGAAGCTTTAGGCAAATATCAATGCATTGCTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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