CK934000

Overview
NameCK934000
Unique NameCK934000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVN-HAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            PV  AF V + F  YK+GVY  T    T  ++  HA+  +G+G ++G PYWL+ NSW  NWG++GYF++  G N CGI
Sbjct:  251 PVEAAFTVYEDFYQYKTGVYVHT----TGQELGGHAIRILGWGTDNGTPYWLVANSWNVNWGENGYFRIIRGTNECGI 324          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 2
Query:   92 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            E E+   +    PV  AF V   F  YKSGVY         +   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  236 EKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHV---TGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            P+  AF V   F +Y+SGVY  T      ++  HAV  VGYG +D GV YW+IKNSWG +WG+ GYF++    N CGI
Sbjct:  214 PLQTAFTVYSDFMYYESGVYQHTY---GRVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIRMTNECGI 288          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 2
Query:   98 ELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            E+Q  +    PV  +++V + F  YKSGVY  T   +  +   HAV  +G+GVE+GV YWLI NSWG ++G+ G+FK+  G N C I
Sbjct:  244 EIQTEIYHYGPVEASYKVYEDFYHYKSGVYHYT---SGKLVGGHAVKIIGWGVENGVDYWLIANSWGTSFGEKGFFKIRRGTNECQI 327          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGV-QVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            Y G +  C+   +  GV +V       +  E++L+  +  V P+ +A +   G   Y  G+     C N    +NHAV+ VGYGVE+ VP+W  KN+WG++WG+ GYF++    + CG+
Sbjct:  204 YAGVNKPCELRGDETGVVKVKGCYRYVVFREEKLKDLLRAVGPIPMAIDA-SGIVNYHHGIIHY--CEN--YGLNHAVLLVGYGVENNVPFWTFKNTWGKDWGEEGYFRVRQNVDACGM 317          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   92 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            E  +Q  + +  PV  AF+V + F  YKSG+Y         +   HA+  +G+GVE   PYWLI NSW E+WG+ G F+M  G++ C I
Sbjct:  246 EKVIQRDIMMYGPVEAAFDVYEDFLNYKSGIYRHV---TGSIVGGHAIRIIGWGVEKRTPYWLIANSWNEDWGEKGLFRMVRGRDECSI 331          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            P+ +AFEV + F  Y  GVY  T      +   HAV  +G+G++DG+PYW + NSW  +WG+ G+F++  G + CGI
Sbjct:  275 PLEIAFEVYEDFLNYDGGVYVHT---GGKLGGGHAVKLIGWGIDDGIPYWTVANSWNTDWGEDGFFRILRGVDECGI 348          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 2
Query:   95 DELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            +++Q  +    P+ VAF V + F  Y +GVY  T   +      HAV  +G+GV++G PYWL+ NSW   WG+ GYF++  G N CGI
Sbjct:  245 EQIQTEILTNGPIEVAFTVYEDFYQYTTGVYVHTAGASLG---GHAVKILGWGVDNGTPYWLVANSWNVAWGEKGYFRIIRGLNECGI 329          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP1_OSTOS (Cathepsin B-like cysteine proteinase 1 OS=Ostertagia ostertagi GN=CP-1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCG 355
            PV   + V + F  Y+SG+Y       T +   HAV  +G+G E G PYW++ NSW ++WG++G+F+M  G N CG
Sbjct:  258 PVVATYTVYEDFAHYRSGIYKHKAGRKTGL---HAVKVIGWGEEKGTPYWIVANSWHDDWGENGFFRMHRGSNDCG 330          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   26 CKFSSENVGVQVLDSVNITLGAEDELQHA-VGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 388
            C  SSE + V      ++ +G+ ++   A +    P+++A +    F  YKSGV   T C      +NH V+ VGY +   VPYW+IKNSWG +WG+ GY ++ MG N C     + YPV A
Sbjct:  226 CSNSSEELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDA-SSFMSYKSGVL--TAC--IGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNAC---LLSEYPVSA 339          
The following BLAST results are available for this feature:
BLAST of CK934000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CPR4_CAEEL2.910e-1446.15Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CATB_PIG4.964e-1442.70Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB3_GIALA4.964e-1448.72Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CPR3_CAEEL6.483e-1443.68Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]
CATV_NPVBS8.467e-1433.61Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CYSP_SCHJA1.106e-1340.45Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CPR6_CAEEL1.106e-1341.56Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CPR5_CAEEL1.444e-1340.91Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CYSP1_OSTOS1.886e-1340.79Cathepsin B-like cysteine proteinase 1 OS=Ostertag... [more]
CYSP2_LEIPI2.463e-1336.89Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934000 ID=CK934000; Name=CK934000; organism=Citrus sinensis; type=EST; length=720bp
GGGCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTG
GCGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAA
TTACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGT
AGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAAT
GTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCTGTTGGGTAC
GGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTCTTGGGGAGA
GAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGAAGAACATGT
GTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAGTCTGCTCCT
GAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTCATAAAACTT
ATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTTATGTACGAA
ATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAATGCATGGCT
GCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTAAACAGTCAT
TGTGACTAGGACACCAACGATGTTATATATATTTTGTCAATGCAAGGTAG
TTGTTATATGGAAGCTTTAGGCAAATATCAATGCATTGCTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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