CK934000

Overview
NameCK934000
Unique NameCK934000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   92 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            E  +Q  +    PV  +F V + F  YKSG+Y             HA+  +G+GVE+  PYWLI NSW E+WG++GYF++  G++ C I
Sbjct:  245 EKAIQKEIMKYGPVEASFTVYEDFLNYKSGIYKHITGEALG---GHAIRIIGWGVENKTPYWLIANSWNEDWGENGYFRIVRGRDECSI 330          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 2
Query:    5 YTGKDGVCKFSS-ENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYP 379
            Y+ ++G C+    E+  V +    ++    E  L  A+   +P+SVA +     F+FY  GV+   +CG   +D++H V AVGYG   G  Y ++KNSWG  WG+ GY +++      + +CGI   AS+P
Sbjct:  227 YSMEEGTCEMQKDESETVTINGHQDVPTNDEKSLLKALAH-QPLSVAIDASGREFQFYSGGVFDG-RCG---VDLDHGVAAVGYGSSKGSDYIIVKNSWGPKWGEKGYIRLKRNTGKPEGLCGINKMASFP 352          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   26 CKFSSENVGVQVLDSVNITLGAEDELQHA-VGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 388
            C  SSE V    +D  ++ +G+ ++   A +    P+++A +    F  YKSGV   T C      +NH V+ VGY +   VPYW+IKNSWG +WG+ GY ++ MG N C     + YPV A
Sbjct:  226 CSNSSELVVGAQIDG-HVLIGSSEKAMAAWLAKNGPIAIALDA-SSFMSYKSGVL--TAC--IGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNAC---LLSEYPVSA 338          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP3_OSTOS (Cathepsin B-like cysteine proteinase 3 (Fragment) OS=Ostertagia ostertagi GN=CP-3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            PV   F V + F  YKSG+Y  T      M   HAV  +G+G E G PYWLI NSW ++WG+ G+++M  G N C I
Sbjct:   92 PVVAGFIVYEDFAHYKSGIYKHTA---GRMTGGHAVKIIGWGKEKGTPYWLIANSWHDDWGEKGFYRMIRGINNCRI 165          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 2
Query:   11 GKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA*SAP 400
            G+   C+ +   +G  + D V++    ED +   +    P+++A +  + F  Y  G+ +S     T   ++H V+ VGY      PYW+IKNSW   WG+ GY ++E G N C +    S  VV    P
Sbjct:  221 GEQPQCQMNGHEIGAAITDHVDLPQD-EDAIAAYLAENGPLAIAVDA-ESFMDYNGGILTSC----TSKQLDHGVLLVGYNDNSNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVVGGPTP 344          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            PV  +F V + FR YKSG+Y  T      +   HAV  +G+G E+   +WLI NSW  +WG+ GYF++  G N CGI
Sbjct:  255 PVVASFAVYEDFRHYKSGIYKHTA---GELRGYHAVKMIGWGNENNTDFWLIANSWHNDWGEKGYFRIVRGSNDCGI 328          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 2
Query:   89 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            +E E+   +    PV  AF V + F  YKSGVY             HA+  +G+GVE+G PYWL  NSW  +WG  G+FK+  G++ CGI
Sbjct:  236 SEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVG---GHAIRILGWGVENGTPYWLAANSWNTDWGITGFFKILRGEDHCGI 322          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            PV  +F V + FR YKSG+Y  T      +   HAV  +G+G E+   +WLI NSW  +WG+ GYF++  G N CGI
Sbjct:  255 PVVASFAVYEDFRHYKSGIYKHTA---GELRGYHAVKMIGWGNENNTDFWLIANSWHNDWGEKGYFRIIRGTNDCGI 328          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 40/141 (28.37%), Postives = 67/141 (47.52%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPVVA*SAPEEIV 412
            Y    G CK +       +     +    E  + +AV   +P++ A +    F+ YK GV++   CG     +NHA+V +GYG +  G  +W+++NSWG  WG+ GY ++         +CGIA    YP +      E++
Sbjct:  210 YKAAKGTCKTNGVPNSAYITRYTYVQRNNERNMMYAVSN-QPIAAALDASGNFQHYKRGVFTGP-CGTR---LNHAIVIIGYGQDSSGKKFWIVRNSWGAGWGEGGYIRLARDVSSSFGLCGIAMDPLYPTLQSGPSVEVI 345          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 2
Query:    5 YTGKDG-VCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-------GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 373
            YTG DG  CK     +   V    N ++ + +E Q A  L++  P++VA       + Y  GV     C      +NH V+ VGYG            PYW+IKNSWGE+WG++G++K+  G+N+CG+ +  S
Sbjct:  229 YTGTDGGSCKLDRSKIVASVS---NFSVVSINEDQIAANLIKNGPLAVAINAAY-MQTYIGGVSCPYICSRR---LNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVS 354          
The following BLAST results are available for this feature:
BLAST of CK934000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CYSP_SCHMA3.217e-1339.33Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
XCP2_ARATH5.488e-1333.59Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
LMCPB_LEIME7.167e-1337.70Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP3_OSTOS7.167e-1345.45Cathepsin B-like cysteine proteinase 3 (Fragment) ... [more]
CYSP_TRYBB9.361e-1330.00Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CYSP2_HAECO9.361e-1344.16Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CATB_CHICK9.361e-1341.11Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CYSP1_HAECO1.597e-1244.16Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]
ANAN_ANACO2.085e-1228.37Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
A494_ARATH2.724e-1234.59Probable cysteine proteinase A494 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934000 ID=CK934000; Name=CK934000; organism=Citrus sinensis; type=EST; length=720bp
GGGCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTG
GCGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAA
TTACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGT
AGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAAT
GTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCTGTTGGGTAC
GGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTCTTGGGGAGA
GAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGAAGAACATGT
GTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAGTCTGCTCCT
GAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTCATAAAACTT
ATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTTATGTACGAA
ATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAATGCATGGCT
GCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTAAACAGTCAT
TGTGACTAGGACACCAACGATGTTATATATATTTTGTCAATGCAAGGTAG
TTGTTATATGGAAGCTTTAGGCAAATATCAATGCATTGCTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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