CK934000

Overview
NameCK934000
Unique NameCK934000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 2
Query:    5 YTGKDGVCKFSSEN-VGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 382
            Y  ++G C  S  N + V +    N+    ED L  AV   +PVSVA +     F+FY  GV++    G+   D+NH V  VGYG   DG  YW+++NSWG  WG+HGY +M+      + +CGIA   SYP+
Sbjct:  217 YKAQEGTCDASKVNDLAVSIDGHENVPANDEDALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT----GDCSTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEHGYIRMQRNISKKEGLCGIAMLPSYPI 344          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 54/130 (41.54%), Postives = 70/130 (53.85%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            Y   D  C +  E    +    V+I    E  L  AV  V P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E     +W++KNSWG  WG+ GY KM   + N CGIAT ASYP V
Sbjct:   91 YEATDTSCNYKPEYSAAKDTGFVDIPQ-REKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGNKGYVKMAKDQNNHCGIATAASYPTV 217          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 385
            Y G    C FS+E   V + DSV ++   ++E + A  L +  P+SVA     G +FY+ G+    +   +P  ++HAV+ VGYG    VP+W IKNSWG +WG+ GY+ +  G   CG+ T AS  VV
Sbjct:  359 YQGHMQSCNFSAEKAKVYINDSVELS---QNEQKLAAWLAKRGPISVAINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 483          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPV 382
            Y G DG C    +N  V  +DS  ++   +E+ L+ AV   +P+S+A E     F+ Y SG++  + CG     ++H VVAVGYG E+G  YW+++NSWG++WG+ GY +M          CGIA   SYP+
Sbjct:  226 YKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAH-QPISIAIEAGGRAFQLYDSGIFDGS-CGT---QLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASSSGKCGIAIEPSYPI 352          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 55/133 (41.35%), Postives = 71/133 (53.38%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV----EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            Y  KDG C++S EN    +     +    ED L +AV  + P+SVA +     F FYK G+Y    C +    V H+++ VGYG      DG  YWL+KNS G  WG+ GY K+   K N CGIAT A YP V
Sbjct:  204 YEEKDGSCRYSPENSTANITGFEFVPKN-EDALMNAVASIGPISVAIDARHASFLFYKRGIYYEPNCSSCV--VTHSMLLVGYGFTGRESDGRKYWLVKNSMGTQWGNKGYMKISRDKGNHCGIATYALYPRV 333          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 51/104 (49.04%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   92 EDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 385
            E  L  AV  V P+SVA +   + F FYK G+Y    C +  MD  H V+ VGYG E    D   YWL+KNSWGE WG  GY KM    +N CGIA+ ASYP V
Sbjct:  232 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 55/133 (41.35%), Postives = 77/133 (57.89%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-----KNMCGIATCASYPV 382
            Y G  G C    +N  V  +D   ++    E  L+ A+   +PVSVA E     F+ Y+SG+++ + CG    +++HAVVAVGYG E+GV YW+++NSWG  WG+ GY +ME          CGIA  ASYPV
Sbjct:  234 YRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISY-QPVSVAIEAGGRIFQHYQSGIFTGS-CGT---NLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASYPV 361          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = 2
Query:    5 YTGKDGVCKFSSEN-VGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 382
            YT ++G C  S  N + V +    N+ +  E+ L  AV   +PVSVA +     F+FY  GV++    G+   D+NH V  VGYG   DG  YW+++NSWG  WG+ GY +M+      + +CGIA  ASYP+
Sbjct:  217 YTAQEGTCDESKVNDLAVSIDGHENVPVNDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT----GDCNTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPI 344          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 55/133 (41.35%), Postives = 73/133 (54.89%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDS-VNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 382
            Y   DG C  S EN     +D   N+    E+ L  AV   +PVSVA +     F+FY  GV++ + CG    +++H V  VGYG   DG  YW +KNSWG  WG+ GY +ME G    + +CGIA  ASYP+
Sbjct:  215 YEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-CGT---ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 342          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            Y G DG C+       V+V          E++L+  + +V P+ VA +  D    Y+ G+     C N     NHAV+ VGYGVE+ VPYW++KN+WGE+WG+ GYF+++   N CGI
Sbjct:  201 YEGSDGNCRVDVAKFVVKVKKCYRYIAVFEEKLKDLLRIVGPIPVAIDASDIVN-YRRGIMRY--CSN--YGFNHAVLLVGYGVENNVPYWILKNTWGEDWGEQGYFRVQQNINACGI 313          
The following BLAST results are available for this feature:
BLAST of CK934000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CYSEP_PHAVU1.142e-1839.10Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]
CATL1_SHEEP1.142e-1841.54Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATF_HUMAN1.142e-1838.76Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
RD21A_ARATH1.491e-1838.64Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CATM_MOUSE1.491e-1841.35Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CATL1_HUMAN1.491e-1849.04Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
GCP1_ARATH1.947e-1841.35Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSEP_VIGMU1.947e-1839.10Vignain OS=Vigna mungo PE=1 SV=1[more]
CYSEP_RICCO2.543e-1841.35Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CATV_NPVHC4.338e-1838.98Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004542_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934000 ID=CK934000; Name=CK934000; organism=Citrus sinensis; type=EST; length=720bp
GGGCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTG
GCGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAA
TTACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGT
AGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAAT
GTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCTGTTGGGTAC
GGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTCTTGGGGAGA
GAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGAAGAACATGT
GTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAGTCTGCTCCT
GAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTCATAAAACTT
ATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTTATGTACGAA
ATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAATGCATGGCT
GCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTAAACAGTCAT
TGTGACTAGGACACCAACGATGTTATATATATTTTGTCAATGCAAGGTAG
TTGTTATATGGAAGCTTTAGGCAAATATCAATGCATTGCTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
back to top