CK934000

Overview
NameCK934000
Unique NameCK934000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 51/118 (43.22%), Postives = 70/118 (59.32%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            YTG DGVCK ++  V  Q+       L +E +L+  +    PVSVA +VVD    YKSGV    K  +    +NH V+ VGYG E+ V YW +KNSWG +WG+ G+F+++   N CGI
Sbjct:  221 YTGVDGVCKNTTRYV--QLSGCYAYDLRSEKKLRQVLHEKGPVSVAIDVVD-LTNYKSGV---AKHCSVDHGLNHGVLLVGYGQENDVKYWTLKNSWGSDWGEQGFFRIKRDVNSCGI 332          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 50/129 (38.76%), Postives = 66/129 (51.16%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            Y   D  C++ S+           +  G ED L+ AV    PV V  +     F  Y+SGVY    C      VNH V+ +GYG  +G  YWL+KNSWG N+G+ GY +M   K N CGIA+  SYP +
Sbjct:  205 YKATDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVCVGVDASHPSFFLYRSGVYYDPAC---TQKVNHGVLVIGYGDLNGKEYWLVKNSWGSNFGEQGYIRMARNKGNHCGIASYPSYPEI 330          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 46/131 (35.11%), Postives = 74/131 (56.49%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG--FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM-EMGKNMCGIATCASYPVVA 388
            Y+GK+  CK + ++  V  L        +E  L+ AVG + P+S    VV G   + Y  G++  + C     +++H V  VGYG+E+G  YW+IKN+WG +WG+ GY ++     + CG+   ASYP++A
Sbjct:  199 YSGKEDKCKANDKSRSVVELTGYKKVTASETSLKEAVGTIGPISA---VVFGKPMKSYGGGIFDDSSCLGD--NLHHGVNVVGYGIENGQKYWIIKNTWGADWGESGYIRLIRDTDHSCGVEKMASYPILA 324          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 54/128 (42.19%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSG-VYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM-GKNMCGIATCASYP 379
            Y    G CK   +NV   V  S  +T G+E  LQ  +    PV+V  +     F+ YK G +YS TKC +  M  NH V AVGYG      YW+I+NSWG +WGD GYF +     NMCGI   ++YP
Sbjct:  179 YKAVAGTCK-KVKNVAT-VTGSRRVTDGSETGLQTIIAENGPVAVGMDASRPSFQLYKKGTIYSDTKCRSRMM--NHCVTAVGYGSNSNGKYWIIRNSWGTSWGDAGYFLLARDSNNMCGIGRDSNYP 302          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   92 EDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            E  L  AV  V P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E    +   +W++KNSWG  WG +GY KM   + N CGIAT ASYP V
Sbjct:  233 EKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 334          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   92 EDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            E  L  AV  V P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E    +   +W++KNSWG  WG +GY KM   + N CGIAT ASYP V
Sbjct:  233 EKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 334          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 38/118 (32.20%), Postives = 69/118 (58.47%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            Y G + +C   +  + V++       +  E++L+  V    PV++A + +D    Y+ G+ +         D+NHAV+ +G+G+E+ VPYW+IKNSWGE+WG++G+ ++    N CG+
Sbjct:  244 YQGSEQMCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDAMDIIN-YRRGILNQCHI----YDLNHAVLLIGWGIENNVPYWIIKNSWGEDWGENGFLRVRRNVNACGL 356          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            Y   +G C+ ++    V+V       L  E++L+  + +V P+ VA +  D    YK GV     C N  +  NHAV+ VGY VE+GVP+W++KN+WG +WG+ GYF+++   N CGI
Sbjct:  201 YEANNGDCRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVN-YKRGVIRY--CANHGL--NHAVLLVGYAVENGVPFWILKNTWGTDWGEQGYFRVQQNINACGI 313          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   92 EDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            E  L  AV  V P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E    +   +W++KNSWG  WG +GY KM   + N CGI+T ASYP V
Sbjct:  233 EKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGISTAASYPTV 334          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 53/133 (39.85%), Postives = 71/133 (53.38%), Query Frame = 2
Query:    5 YTGKDG-VCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE---DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            Y G+D   C +  E         V++    E  L  AV  + P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E       +W++KNSWG  WG +GY KM   + N CGIAT ASYP V
Sbjct:  204 YLGRDTETCNYKPECSAANDTGFVDLPQ-REKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSK--DLDHGVLVVGYGFEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 333          
The following BLAST results are available for this feature:
BLAST of CK934000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CATV_GVXN5.666e-1843.22Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CATS_SAIBB5.666e-1838.76Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATLL_PHACE1.649e-1735.11Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
ACP1_ENTHI1.649e-1742.19Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CATL2_BOVIN2.153e-1746.15Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_BOVIN2.153e-1746.15Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CATV_NPVHZ2.812e-1732.20Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATV_NPVCD2.812e-1738.14Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATL1_PIG2.812e-1745.19Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
CATL1_CANFA2.812e-1739.85Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934000 ID=CK934000; Name=CK934000; organism=Citrus sinensis; type=EST; length=720bp
GGGCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTG
GCGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAA
TTACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGT
AGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAAT
GTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCTGTTGGGTAC
GGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTCTTGGGGAGA
GAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGAAGAACATGT
GTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAGTCTGCTCCT
GAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTCATAAAACTT
ATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTTATGTACGAA
ATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAATGCATGGCT
GCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTAAACAGTCAT
TGTGACTAGGACACCAACGATGTTATATATATTTTGTCAATGCAAGGTAG
TTGTTATATGGAAGCTTTAGGCAAATATCAATGCATTGCTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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