CK934007

Overview
NameCK934007
Unique NameCK934007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.494e-12
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  252 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAE 431
            ++ F  P+TGASMNPARS+GPA+V+G Y  +WVY+ AP+ G +  A  Y++LR   KP+ +
Sbjct:  228 NVLFAGPVTGASMNPARSLGPAMVAGRYGGVWVYVAAPVSGTVCGAWAYNLLRFTDKPLRD 288          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.494e-12
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  252 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAE 431
            ++    P++ ASMNP RS+GPA+V G YK +W+Y+VAP +GA+A A VY+ +R   KP+ E
Sbjct:  220 NVLIAAPVSSASMNPGRSLGPALVYGCYKGIWIYLVAPTLGAIAGAWVYNTVRYTDKPLRE 280          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = -2
Query:  231 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILRVPKPVAEKPEETKS 431
            +I    P TG SMNP R++GPAV +G Y+ LW+Y++AP +GALA A VY  +++     E P   +S
Sbjct:  233 NILVAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLLAPTLGALAGASVYKAVKLRDENGETPRTQRS 299          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = -2
Query:  270 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILRV 431
            ++ F  P++GASMNPARSIGPA+V   Y  LWVYI+ P  GA A A  YS++R+
Sbjct:  214 NVLFAGPVSGASMNPARSIGPALVGSKYTALWVYILGPFAGAAAGAWAYSLIRL 267          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.762e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = -2
Query:  231 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILRVPKPVAEKPEETKS 431
            +I    P TG SMNP R++GPAV +G Y+ LW+Y++AP +GA+A A VY+ +++     E P   +S
Sbjct:  242 NILIAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLIAPTLGAVAGAGVYTAVKLRDENGETPRPQRS 308          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP21_ARATH (Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.762e-11
Identity = 30/67 (44.78%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  231 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILRVPKPVAEKPEETKS 431
            ++ F   ++GASMNPARSIGPA+V G YK +W+Y++AP +GA++ A+++ +L  P     +PE +K+
Sbjct:  212 NVIFAGEVSGASMNPARSIGPALVWGCYKGIWIYLLAPTLGAVSGALIHKML--PSIQNAEPEFSKT 276          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.712e-11
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = -2
Query:  243 FCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILRVPK-PVAEKPE 422
            F  P++G SMNPAR++ PAV S V+  LW+Y + P++G L+ A VY+ +R  + P A KP+
Sbjct:  215 FAGPVSGGSMNPARTLAPAVASNVFTGLWIYFLGPVVGTLSGAWVYTYIRFEEAPAAAKPD 275          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  231 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILRVPKPVAEKPEETKS 431
            +I    P T ASMNP R++GPA+ +  Y+ +WVY+ API+GAL  A  Y+I+++P+   E P+E +S
Sbjct:  237 NILIAGPATSASMNPVRTLGPAIAANNYRAIWVYLTAPILGALIGAGTYTIVKLPEE-DEAPKERRS 302          
The following BLAST results are available for this feature:
BLAST of CK934007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NIP12_ORYSJ9.494e-1249.18Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
NIP11_ARATH9.494e-1249.18Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
NIP31_MAIZE2.115e-1144.78Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
NIP14_ORYSJ2.115e-1155.56Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
NIP31_ORYSJ2.762e-1143.28Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
NIP21_ARATH2.762e-1144.78Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1... [more]
NIP23_MAIZE4.712e-1145.90Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP61_ARATH8.037e-1144.78Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_E02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934007 ID=CK934007; Name=CK934007; organism=Citrus sinensis; type=EST; length=474bp
CTGAAAAGAGGAAAGAAAATTATATATGGATTCATGCTGAGTGAAAAGAC
CTACACAAGCTTGCTGAGATGAAAAACGTACATTGATTTATGATATCTGA
TAACATTAGGCAGAGGCTTAAAGTAAACTAATTTTGGACACGCAGCATCA
TTCCTCTGGCGCTTATGGGCAGCAGAGCAGAGAAACTGGTTAATCTATGG
GTCGGCATGAGGGTACAATTGATTTATTGTGCTTTTGGTCTCCTCAGGCT
TTTCAGCTACTGGCTTGGGTACTCTGAGTATGCTGTATACCATGGCTGCA
GCCAAGGCTCCGATGATGGGAGCAACGATATAAACCCAGAGATTCTTGTA
AACACCAGAGACCACAGCAGGACCTATGCTTCTTGCAGGGTTCATTGAAG
CTCCAGTAATTGGCCTGCAGAAATATATGTGATAACCAAATTTATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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