CK934011

Overview
NameCK934011
Unique NameCK934011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934011_ssr675 microsatellite CK934011_ssr675:675..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11531 contig Csv1_Contig11531:146..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.411e-57
Identity = 106/155 (68.39%), Postives = 133/155 (85.81%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKRRNI 466
            RLDA  +L GE GLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R G L+E++ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GG RPGR KR+ +
Sbjct:   23 RLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.174e-56
Identity = 104/153 (67.97%), Postives = 132/153 (86.27%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKRR 460
            R+DA  ++VGE GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  G RPGR  R+
Sbjct:   20 RIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARK 172          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 216.468 bits (550), Expect = 1.215e-55
Identity = 106/154 (68.83%), Postives = 130/154 (84.42%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKRRN 463
            RLDA  +L GE GL+ KRE++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   23 RLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.072e-55
Identity = 102/155 (65.81%), Postives = 133/155 (85.81%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKRRNI 466
            RLD   +L+G  GL+ KRE+WRV+Y L+++R AAR+LLTL++K+P+R+FEG ALLRR+ + G L+E++ KLDYVL L VE+FLERRLQT VFK G+AKSIHHAR+LI+Q HIRV RQ+V++PSF+VR+DSQKHI+FSL SP+GG RPGRVKRR +
Sbjct:   23 RLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.706e-55
Identity = 105/154 (68.18%), Postives = 130/154 (84.42%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKRRN 463
            RLDA  +L GE GL+ K+E++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   23 RLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.370e-51
Identity = 97/152 (63.82%), Postives = 121/152 (79.61%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKR 457
            RLD   +L G+ GLRCKRE+WRV   LS++R  AR LLTL E +PRR+ EG A++RR H YGFL+E ++KLDYVL+LTV + LERRLQT+VFK G+AKS+HH+RVLI+QRHI V +Q+V IPSF+VRV S+ HI F+  SPFG  RPGRVKR
Sbjct:   22 RLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKR 173          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.912e-43
Identity = 88/156 (56.41%), Postives = 118/156 (75.64%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS-LTSPFGGDRPGRVKRRNI 466
            R+D   ++ G+ GL+ K+E+WR+QY L+R R  AR LLTL E + +R FEG ALLRRM R G L+ES+ +LDY+L+L  E+ LERRLQT+V K G++KSIHHAR LI QRHIRVG+Q VN+PSF+VRVDS+KHI  S  ++   G +PGR+ R+ +
Sbjct:   25 RMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.005e-38
Identity = 82/155 (52.90%), Postives = 112/155 (72.26%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF-GGDRPGRVKRRN 463
            R DA  +LVG+ GL+ K+E+ RV Y L  +R  A+ +L  D K+P+R+ EG ALLRR+H  G L   QNKL++VLAL  EN LERRLQTLV++ G AKSIHHARVLIR + I+VG+Q+V++PSF+VRV+S+  I+ +  +P    +  GR KR+N
Sbjct:   23 RFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.062e-35
Identity = 73/109 (66.97%), Postives = 90/109 (82.57%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQ 328
            RLD   +L+GE GLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+A SIHH RVLIRQ
Sbjct:   22 RLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLIRQ 130          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 63/142 (44.37%), Postives = 93/142 (65.49%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            RL    +L+GE GLR KRE+W     L R R+ AR+LL L  +   +  E +ALL+R++  G ++E+   LD VL+LTV + LERRLQT+V+K G+AKSI+HAR L+   HI +  + V  P ++VR D ++ I ++ TSP+
Sbjct:   22 RLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEVREK--EEKALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY 160          
The following BLAST results are available for this feature:
BLAST of CK934011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS9A_SCHPO8.411e-5768.3940S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9_DICDI4.174e-5667.9740S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9B_YEAST1.215e-5568.8340S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9_CAEEL2.072e-5565.8140S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9A_YEAST2.706e-5568.1840S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_TRYBB2.370e-5163.82Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9_NAEFO6.912e-4356.4140S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_ENTHI3.005e-3852.9040S ribosomal protein S9 OS=Entamoeba histolytica ... [more]
RS9_PIG4.062e-3566.9740S ribosomal protein S9 (Fragment) OS=Sus scrofa ... [more]
RS4_IGNH47.186e-2444.3730S ribosomal protein S4P OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934011 ID=CK934011; Name=CK934011; organism=Citrus sinensis; type=EST; length=735bp
GCGATTGGATGCTGNNNTGAGACTTGTGGGAGAGTAGGGGCTTCGCTGCA
AGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGCATCCGAAATGCT
GCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTCGA
GGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGA
GCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTT
GAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAAT
TCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGC
AGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCAC
ATTGAATTCTCACTGACAAGTCCATTCGGAGGTGACCGCCCTGGAAGAGT
GAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGATG
GAGATGAAGAGGATGAAGAATAAATTACCTGTGTGAGCAGATAGTTTTTT
TATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGTGGACTTATCTTC
TCTAAGTTTTATGTTTTTGTTTGCGAATTTTCTTGCTATAATAGGAGGTT
TTGCTTGCTTTGTGTCGCATATCTATAGATAGATAGATAGATAGGTAGTT
TCTGCTCCTGGAGAGTTTCATTTATCGAGAATAAG
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