CK934011

Overview
NameCK934011
Unique NameCK934011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934011_ssr675 microsatellite CK934011_ssr675:675..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11531 contig Csv1_Contig11531:146..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 60/142 (42.25%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            RLD    L+ +  L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   22 RLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 60/146 (41.10%), Postives = 83/146 (56.85%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDR 439
            RLD    LV +  L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:   22 RLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            RLD    L  +  L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:   22 RLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436
            R+D   ++V + GL+ K+E+WR +  LS IR+ ARDL   L  ++ N ++  + E +++R++RY  L E+   LD VL+LTVEN L+RRLQT+VF+  +A S+  AR LI   HI V  + V +P  +V    +  I +   SP   +
Sbjct:   22 RIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSPVANE 166          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 59/142 (41.55%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            RLD    L+ +  L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   22 RLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 59/142 (41.55%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            RLD    L+ +  L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   22 RLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 60/142 (42.25%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            RLD    L+ +  L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R G L  +   LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:   22 RLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 58/143 (40.56%), Postives = 86/143 (60.14%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLT-LDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            R+DA  +L+ + GL+ KRELWR Q  L+  R  AR L   L   +P  I + + L+ ++ R   L E+   LD VL+L +E+ LERRL+TLV+K  +A ++  AR  I   HI+V  ++V IPSF+V    +  I ++ TSPF
Sbjct:   22 RIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 53/147 (36.05%), Postives = 85/147 (57.82%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRP 442
            R+     L+G+ GLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   22 RIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            RL+    L+G  GLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:   22 RLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
The following BLAST results are available for this feature:
BLAST of CK934011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_PYRHO6.296e-2042.2530S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_THESM8.222e-2041.1030S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_THEGJ1.074e-1942.2530S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_THEAC1.074e-1938.5130S ribosomal protein S4P OS=Thermoplasma acidophi... [more]
RS4_PYRFU1.074e-1941.5530S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB1.074e-1941.5530S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_THEON1.403e-1942.2530S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_PICTO1.832e-1940.5630S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_SULSO3.124e-1936.0530S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_AERPE3.124e-1936.6230S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934011 ID=CK934011; Name=CK934011; organism=Citrus sinensis; type=EST; length=735bp
GCGATTGGATGCTGNNNTGAGACTTGTGGGAGAGTAGGGGCTTCGCTGCA
AGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGCATCCGAAATGCT
GCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTCGA
GGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGA
GCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTT
GAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAAT
TCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGC
AGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCAC
ATTGAATTCTCACTGACAAGTCCATTCGGAGGTGACCGCCCTGGAAGAGT
GAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGATG
GAGATGAAGAGGATGAAGAATAAATTACCTGTGTGAGCAGATAGTTTTTT
TATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGTGGACTTATCTTC
TCTAAGTTTTATGTTTTTGTTTGCGAATTTTCTTGCTATAATAGGAGGTT
TTGCTTGCTTTGTGTCGCATATCTATAGATAGATAGATAGATAGGTAGTT
TCTGCTCCTGGAGAGTTTCATTTATCGAGAATAAG
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