CK934011

Overview
NameCK934011
Unique NameCK934011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934011_ssr675 microsatellite CK934011_ssr675:675..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11531 contig Csv1_Contig11531:146..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 57/145 (39.31%), Postives = 86/145 (59.31%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424
            RL+   +LV + GLR KRELWR Q  L + R  ARDLL       ++      + + +++++++ G L E+   LD +L L+VE+FLERRLQT+V++ G+A++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:   22 RLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 2
Query:    5 LDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 406
            L+   RL G  GLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT+V++ G AKS + AR LI   HIRV  + +  PS++V+++ +  IE
Sbjct:   23 LEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRP 442
            R+     L+G+ GLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   22 RIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRP 442
            R+     L+G+ GLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   22 RIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRP 442
            R+     L+G+ GLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   22 RIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRP 442
            R+     L+G+ GLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   22 RIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRP 442
            R+     L+G+ GLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   22 RIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRP 442
            R+     L+G+ GLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   22 RIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 2
Query:   38 GLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKR 457
            GLR KRE+WR    L + R+ AR++L +     + P+ I   + L+  + RYG L      +D +L+L VE+ LERRLQT+V++ G+A+S   AR LI   HI +  Q V++PS++V +  +  I +  TS  G +  G  +R
Sbjct:   34 GLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGEA--LLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427
            R++   RLV E GLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R G L    + +D VLAL V   LERRLQTLV++ G+A+S   AR L+   HI +G + V +P ++V    +  I ++  SPF
Sbjct:   22 RIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165          
The following BLAST results are available for this feature:
BLAST of CK934011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_ARCFU5.330e-1939.3130S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]
RS4_KORCO9.091e-1939.5530S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_SULIY1.187e-1836.0530S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN1.187e-1836.0530S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM1.187e-1836.0530S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL1.187e-1836.0530S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK1.187e-1836.0530S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIA1.187e-1836.0530S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_METLZ1.187e-1837.0630S ribosomal protein S4P OS=Methanocorpusculum la... [more]
RS4_METB61.187e-1840.6930S ribosomal protein S4P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934011 ID=CK934011; Name=CK934011; organism=Citrus sinensis; type=EST; length=735bp
GCGATTGGATGCTGNNNTGAGACTTGTGGGAGAGTAGGGGCTTCGCTGCA
AGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGCATCCGAAATGCT
GCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTCGA
GGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGA
GCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTT
GAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAAT
TCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGC
AGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCAC
ATTGAATTCTCACTGACAAGTCCATTCGGAGGTGACCGCCCTGGAAGAGT
GAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGATG
GAGATGAAGAGGATGAAGAATAAATTACCTGTGTGAGCAGATAGTTTTTT
TATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGTGGACTTATCTTC
TCTAAGTTTTATGTTTTTGTTTGCGAATTTTCTTGCTATAATAGGAGGTT
TTGCTTGCTTTGTGTCGCATATCTATAGATAGATAGATAGATAGGTAGTT
TCTGCTCCTGGAGAGTTTCATTTATCGAGAATAAG
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