CK934011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18 Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 2 Query: 20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 379 +L+GE GLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ +LD +L+L V LERRLQT+V++ G+AKSIHHAR LI H+ V + V P F+V Sbjct: 30 QLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18 Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 2 Query: 20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 379 +L+GE GLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD +L+L V LERRLQTLVF+ G+AKSIHHAR L+ H+ V + V P F+V Sbjct: 30 QLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18 Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436 R++ RLV E GLR KRE+W + AL + R AAR+++ L + R + + L+ + R G L E+ + +D VLAL VE L+RRLQT V++ G A+S AR I HI +G + V IP + V Q+ I ++ +SP D Sbjct: 22 RIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSPLVSD 168
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17 Identity = 60/137 (43.80%), Postives = 80/137 (58.39%), Query Frame = 2 Query: 20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 421 RL+GE GLR K+ELW + L I++ AR++L+ P I GEA R R+ R G + + LD VLAL V LERRLQTLV++ GMA+SIH AR LI HI + V P ++V + + I F+ TS Sbjct: 30 RLIGEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17 Identity = 54/153 (35.29%), Postives = 84/153 (54.90%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKR 457 R+ L+ GLR KRELW+ + L + R R LL + R E A++ R+ R+G L++ + LD +L+L + + LERRLQT V++ G+A +I AR I HI+V Q V +PS++V+ + I++ SP R G +R Sbjct: 22 RMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLA--REGHPER 171
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17 Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436 R+D +++ + GL+ KRE+WR + LS IR+ AR L L + N ++ + E +++R+ RY L + LD VL+LTVEN L+RRLQT+VFK +A S AR LI HI V + V +P +V + I + SP + Sbjct: 22 RIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSPIANE 166
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17 Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427 RLD L L+ K+ELWR + L R AR LL K E + LL+R++R G L + LD VL+LTVE+ LERRLQT+V++ G+A+++ AR LI HI V Q++ P ++V + + I ++ SPF Sbjct: 22 RLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPF 160
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17 Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 2 Query: 20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 403 +LVGE GLR K+ELW + L I AR LL++ +E+ P + ++++ GF+E+ LD +L+L V LERRLQT+V++ G+AKSI+HAR L+ H+ V + V P F+V D + I Sbjct: 30 QLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17 Identity = 58/157 (36.94%), Postives = 88/157 (56.05%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRR---IFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGDRPGRVKRRN 463 R++ R+V E GLR KRE+WR Q L R R AAR+LL ++ + E LL ++R G L + D VL+L ++ LERRLQT+V++ G+A+S AR ++ HI + + V+IPS+ V D + I + TSP + ++R N Sbjct: 22 RIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSPLTSEGHPEIERIN 177
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17 Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = 2 Query: 20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 379 +L+GE GLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD VL+L V LERRLQT+V++ G+AKSI+HAR LI HI V + V+ P F+V Sbjct: 30 QLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147 The following BLAST results are available for this feature:
BLAST of CK934011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934011 ID=CK934011; Name=CK934011; organism=Citrus sinensis; type=EST; length=735bpback to top |