CK934011

Overview
NameCK934011
Unique NameCK934011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934011_ssr675 microsatellite CK934011_ssr675:675..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11531 contig Csv1_Contig11531:146..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 2
Query:   20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 379
            +L+GE GLR KRELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR LI   HI +  + V  P F+V
Sbjct:   30 QLMGEYGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.896e-16
Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424
            R+ +  +LV   GLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++ S   +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:   22 RMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 51/145 (35.17%), Postives = 78/145 (53.79%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436
            R+ +   +  + GL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+V+K G+AK+   AR  I   HI V  + V  PS++V V     IE+   SP   +
Sbjct:   22 RIQSEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSPMASE 164          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.223e-16
Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436
            R+ +   +  + GL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L ES+  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP   +
Sbjct:   22 RIQSEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSPMASE 164          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 52/141 (36.88%), Postives = 82/141 (58.16%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424
            R+    RLV + GL+ K+E+W+ +  + R R  AR LL +  ++  +  E E LL  + R G L E   KL+ VL LTVE+ L RRLQTLV K G+A+++  AR ++   HI +  + ++ P ++V+   +  I F  +SP
Sbjct:   22 RIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.229e-15
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 2
Query:   38 GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424
            GL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD++L+L +E+ LERRLQTLV++ G+AK+   AR LI   HI V  + V  PS++V V     I +   SP
Sbjct:   34 GLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:    2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGG-DRPGR 448
            RL    RL+ E GL+ KRELW  +    + R  AR L            E E  L ++ + G L E+  +LD VL LTV++ LERRLQT++ + G+AK++  AR  I   HI V  ++V+ PS++V+ + +  IEF   SP    + P R
Sbjct:   19 RLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSPLANPEHPAR 167          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   38 GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436
            GL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+VF+ G+AK+   AR  I   HI V  + V  P++++ V     IE+   SP   +
Sbjct:   34 GLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSPMASE 164          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   38 GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436
            GL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP   +
Sbjct:   34 GLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSPMASE 164          
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 2
Query:   20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 412
            + +G  GLR KRELW+    LSR+R+ AR LL L ++   R  +   L++ + R G L  S   LD VL LT  + L RRLQT+V K    K+ + AR  +   HI +G + V+IPS+ V V+ +  I F+
Sbjct:   28 KTLGTFGLRTKRELWKAHTELSRVRHQARSLLALRQEV--RAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155          
The following BLAST results are available for this feature:
BLAST of CK934011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_PYRAR4.988e-1742.6230S ribosomal protein S4P OS=Pyrobaculum arsenatic... [more]
RS4_METBF1.896e-1635.3730S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_METM73.233e-1635.1730S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METM54.223e-1634.4830S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METTH7.203e-1636.8830S ribosomal protein S4P OS=Methanobacterium ther... [more]
RS4_METVS1.229e-1537.9830S ribosomal protein S4P OS=Methanococcus vanniel... [more]
RS4_NANEQ1.605e-1537.3330S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]
RS4_METMP1.605e-1536.0930S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METM62.096e-1536.0930S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_NITMS2.737e-1539.6930S ribosomal protein S4P OS=Nitrosopumilus mariti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004542_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934011 ID=CK934011; Name=CK934011; organism=Citrus sinensis; type=EST; length=735bp
GCGATTGGATGCTGNNNTGAGACTTGTGGGAGAGTAGGGGCTTCGCTGCA
AGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGCATCCGAAATGCT
GCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTCGA
GGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGA
GCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTT
GAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAAT
TCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGC
AGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCAC
ATTGAATTCTCACTGACAAGTCCATTCGGAGGTGACCGCCCTGGAAGAGT
GAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGATG
GAGATGAAGAGGATGAAGAATAAATTACCTGTGTGAGCAGATAGTTTTTT
TATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGTGGACTTATCTTC
TCTAAGTTTTATGTTTTTGTTTGCGAATTTTCTTGCTATAATAGGAGGTT
TTGCTTGCTTTGTGTCGCATATCTATAGATAGATAGATAGATAGGTAGTT
TCTGCTCCTGGAGAGTTTCATTTATCGAGAATAAG
back to top