CK934011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17 Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 2 Query: 20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 379 +L+GE GLR KRELW + L I AR LL T +E+ P + ++++ GF+E+ LD +L+L V LERRLQT+V++ G+AKSI+HAR LI HI + + V P F+V Sbjct: 30 QLMGEYGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.896e-16 Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424 R+ + +LV GLR KRE+W+ L R+ AR LL + R EG E +L ++ RYG ++ S +D +L+L EN LERRLQT V + G+A+++ AR I HI + + +P +V + + HI + TSP Sbjct: 22 RMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16 Identity = 51/145 (35.17%), Postives = 78/145 (53.79%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436 R+ + + + GL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V+K G+AK+ AR I HI V + V PS++V V IE+ SP + Sbjct: 22 RIQSEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSPMASE 164
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.223e-16 Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436 R+ + + + GL K+ELW+++ L R AR L++ + + E L + RY L ES+ LD+VL+L +E+ LERRLQT+V++ G+AK+ AR I HI V + V P+++V V IE+ SP + Sbjct: 22 RIQSEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSPMASE 164
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16 Identity = 52/141 (36.88%), Postives = 82/141 (58.16%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424 R+ RLV + GL+ K+E+W+ + + R R AR LL + ++ + E E LL + R G L E KL+ VL LTVE+ L RRLQTLV K G+A+++ AR ++ HI + + ++ P ++V+ + I F +SP Sbjct: 22 RIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.229e-15 Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 2 Query: 38 GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424 GL K+ELW+++ L R AR L++ + + E L + RY L E + LD++L+L +E+ LERRLQTLV++ G+AK+ AR LI HI V + V PS++V V I + SP Sbjct: 34 GLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15 Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGG-DRPGR 448 RL RL+ E GL+ KRELW + + R AR L E E L ++ + G L E+ +LD VL LTV++ LERRLQT++ + G+AK++ AR I HI V ++V+ PS++V+ + + IEF SP + P R Sbjct: 19 RLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSPLANPEHPAR 167
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15 Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2 Query: 38 GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436 GL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+VF+ G+AK+ AR I HI V + V P++++ V IE+ SP + Sbjct: 34 GLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSPMASE 164
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15 Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2 Query: 38 GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436 GL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V++ G+AK+ AR I HI V + V P+++V V IE+ SP + Sbjct: 34 GLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSPMASE 164
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15 Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 2 Query: 20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 412 + +G GLR KRELW+ LSR+R+ AR LL L ++ R + L++ + R G L S LD VL LT + L RRLQT+V K K+ + AR + HI +G + V+IPS+ V V+ + I F+ Sbjct: 28 KTLGTFGLRTKRELWKAHTELSRVRHQARSLLALRQEV--RAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155 The following BLAST results are available for this feature:
BLAST of CK934011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934011 ID=CK934011; Name=CK934011; organism=Citrus sinensis; type=EST; length=735bpback to top |