CK934011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.575e-15 Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424 RL+ RL+ + GLR KRELW+ Q L + R AR+L+ L + + + L+ ++RYG + E+ + D VLAL VE L+RRLQTLV + G A+S AR I HI + + V IP + RV+ + E S P Sbjct: 22 RLEDEKRLIIDYGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIPGY--RVERAEEAEISYYGP 162
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15 Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436 R+ L + GL K+E+W+++ L R AR L++ + E L ++RYG L + LD VL+L +E+ LERRLQTLVF+ G+A + AR I HI V + +N PS++V + + I + SP + Sbjct: 22 RIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSPMASE 164
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15 Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 2 Query: 20 RLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 427 R +G GLR KRELW+ LSR+RN AR LL L ++ R + LLR + R G + + + LD VL L V + L RRLQT+V K + + AR + HI + ++V IPS+ V V+ + I+ + S F Sbjct: 28 RTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLVGKDAS-LDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METMA (30S ribosomal protein S4P OS=Methanosarcina mazei GN=rps4p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14 Identity = 50/148 (33.78%), Postives = 77/148 (52.03%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTL-------DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424 R+ A +LV GLR K+E+W+ L R+ AR LL E + E +L ++ RYG ++ N +D +L+L EN LERRLQT V + G+A+++ AR I HI + + IP +V + + HI + +SP Sbjct: 22 RMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSKLIRYGIIKADAN-VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14 Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424 R+ +LV GLR K+E+W+ L R+ AR LL EG E +L ++ RYG ++ N +D +L+L EN LERRLQT V + G+A+++ AR I HI + + IP +V + + HI + SP Sbjct: 22 RMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSP 167
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14 Identity = 51/144 (35.42%), Postives = 76/144 (52.78%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 424 R+ + LV + GLR KRELW+ L R R AR LL ++ E + LL ++ R+ L+ N +D VL L E LERRLQT V + G+A++ AR I HI + + V +P +V + + ++E+ TSP Sbjct: 22 RMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14 Identity = 50/133 (37.59%), Postives = 69/133 (51.88%), Query Frame = 2 Query: 23 LVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 421 L+ GL+ K ELWR Q L R AR LL GE + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++ AR + H+ V V PS+ V V + + F TS Sbjct: 29 LLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14 Identity = 50/133 (37.59%), Postives = 69/133 (51.88%), Query Frame = 2 Query: 23 LVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 421 L+ GL+ K ELWR Q L R AR LL GE + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++ AR + H+ V V PS+ V V + + F TS Sbjct: 29 LLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14 Identity = 51/139 (36.69%), Postives = 72/139 (51.80%), Query Frame = 2 Query: 23 LVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGD 436 L+ GL K ELWR Q L R AR L+ + + E G L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+ + AR I H+ V V+ PS+ V V + IEF TSP D Sbjct: 28 LLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSPLADD 165
BLAST of CK934011 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13 Identity = 46/136 (33.82%), Postives = 77/136 (56.62%), Query Frame = 2 Query: 2 RLDAXXRLVGE*GLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 409 R+ RL + GL+ K+E+W+ + + R R AR +L +D R + + LL + R GF+ + KL+ VL L VE+ L RRLQ+LVFK G++ + AR+ + HI + + +N P +V +++I+F Sbjct: 22 RIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154 The following BLAST results are available for this feature:
BLAST of CK934011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934011 ID=CK934011; Name=CK934011; organism=Citrus sinensis; type=EST; length=735bpback to top |