CK934014

Overview
NameCK934014
Unique NameCK934014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934014_ssr564 microsatellite CK934014_ssr564:564..573. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11505 contig Csv1_Contig11505:61..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.355e-44
Identity = 90/156 (57.69%), Postives = 117/156 (75.00%), Query Frame = 1
Query:   91 MGLDSSPLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 555
            M L   P+ S L+ M+E+  +D  + K+ N P+R Y+RDAKAM ATPADV E+PN+Y F+VDMPG+K  +IKVQVE+DNVL++SGER+RE +E +G KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV            TI+V++A
Sbjct:    1 MDLGRFPIISILEDMLEV-PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.604e-40
Identity = 81/150 (54.00%), Postives = 113/150 (75.33%), Query Frame = 1
Query:  109 PLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 555
            P+FS L+ M+E  A +    K+ N P+R Y+RDAKAM ATPADV E+P++YVF VDMPG+K  +I+VQ+E++NVL++SG+R+R+ +E +G K+VRMERR+GKFMRKF LP+NA++E ISA C DGVL VT+            TI+V++A
Sbjct:    9 PIFSILEDMLE--APEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.807e-30
Identity = 75/168 (44.64%), Postives = 106/168 (63.10%), Query Frame = 1
Query:   76 MDFRIMGLDSSPLFST-LQHMMEMGADDSADNKSSNAPTRTYVRDAKAMGATPADVKEYPNS--YVFIVDMPGLKSGDIKVQVEDDNVLLISGERKR-----EEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 555
            M+  ++G    PL +  +Q ++++   D  + +  N PTR YVRD +AM  TP DVKE   S   V  VDMPG+   D++V+VED NVL ISGER+R     ++  +G KY+RMERR+GKFMR+F LPE+A+++ + A  +DGVLTVTVD            +EVK+A
Sbjct:    1 MELSVVG--GEPLLAVAMQQLLDLDLPDELE-RQLNPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVA 165          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  166 NKSSNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            N  S+A    + R+  A  +T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  GKFMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   34 NTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTV 144          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 52/109 (47.71%), Postives = 77/109 (70.64%), Query Frame = 1
Query:  172 SSNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            S+++P+ ++ R+  A  +T  D KE P ++VF  D+PGLK  ++KV+VEDD VL ISGER  E+E    ++ R+ER  GKF+R+F LPENA ++ + A  ++GVLTVTV
Sbjct:   33 SNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTV 141          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  172 SSNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            SS     +  RD  A      D KE P ++VF  D+PGLK  ++KV+VED NVL ISGER +E E+   K+ R+ER  GKFMR+F LPENA +E + A  ++GVLTV V
Sbjct:   34 SSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVV 142          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.533e-21
Identity = 50/109 (45.87%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  172 SSNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            +++A + ++ R+  A  +T  D KE P ++VF  D+PG+K  ++KV++EDD VL ISGER  E+E    ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   33 NNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 141          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  205 DAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            ++ A   T  D KE P  +VF VD+PGLK  ++KV+VE+D VL ISGER  E+E    K+ RMER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  202 RDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            RD  A      D KE P S+VF  D+PG+K  ++KV+VE+ NVL+ISG+R +E+E    K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   34 RDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTV 132          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 49/102 (48.04%), Postives = 75/102 (73.53%), Query Frame = 1
Query:  202 RDAKAMGATPA--DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 501
            +D  +M  +PA  D KE P  +V ++D+PGLK  +IKV+VE++ VL +SGERK+EEEK G  + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+D
Sbjct:   57 KDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLD 158          
The following BLAST results are available for this feature:
BLAST of CK934014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS176_ARATH8.355e-4457.6917.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH5.604e-4054.0017.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ1.807e-3044.6419.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP16_SOYBN3.089e-2250.4518.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA3.089e-2247.7118.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS181_ARATH6.883e-2249.5418.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_MEDSA1.533e-2145.8718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOLLC3.416e-2153.0617.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16C_ORYSJ3.416e-2150.5116.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP41_SOYBN5.826e-2148.0422.0 kDa class IV heat shock protein OS=Glycine ma... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934014 ID=CK934014; Name=CK934014; organism=Citrus sinensis; type=EST; length=640bp
GGGGAACCAACAAAAGACGAACGAATCCTCATTTGGCAGTAGCAAACATC
AACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCATGGGTTTGG
ACTCGTCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGATGGGGGCG
GACGACTCCGCTGACAACAAGTCATCCAACGCGCCGACGCGCACGTACGT
GAGAGACGCCAAGGCAATGGGGGCGACGCCTGCGGACGTGAAGGAGTATC
CGAACTCGTACGTGTTCATCGTCGATATGCCCGGACTGAAGTCGGGGGAC
ATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGTGAGAG
GAAGCGGGAGGAGGAGAAAGATGGGGCCAAGTATGTGAGAATGGAGAGGA
GGGTTGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTT
GAAGCCATTTCGGCGGTGTGTCAGGACGGAGTGTTGACTGTGACTGTCGA
TAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGA
TTGCTTGAACTTTGAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTC
TTTTCTATTTGCCGGTTGTTATGAATAATTTTGCTTGTGG
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