CK934014

Overview
NameCK934014
Unique NameCK934014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934014_ssr564 microsatellite CK934014_ssr564:564..573. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11505 contig Csv1_Contig11505:61..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.214e-20
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  175 SNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            S  P      +  A      D KE P ++VF  D+PG+K  ++KV+VED NVL ISG+R RE+E+    + R+ER  G+FMRKF LPENA V+ + A  ++GVLTVTV
Sbjct:   38 STVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTV 145          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.777e-20
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  226 TPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  G FMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   46 TRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTV 136          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.777e-20
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  205 DAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            +  A      D KE P ++VF  D+PGLK  ++KV+VED NVL ISGER +E+E+   K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 144          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS186_ORYSJ (18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.932e-20
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  220 GATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLI-------SGERKREEEKDGAKYVRMERRVG--KFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            G  P D+ E P  Y F++D+PGL   DI+V +E+D VL++       +G+RKREEE+   KY+R+ERR     F RKF LPE+A+   ISA C++GVLTVTV
Sbjct:   53 GGAPVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTV 154          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  169 KSSNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            K  + PT +   +  A   T  D KE   ++V   D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R++R  GKFMR+F LPENA VE + A  ++GVLTVT+
Sbjct:   28 KDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTI 137          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.413e-20
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1
Query:  235 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            D KE P  +V +VD+PGLK  DIK++VE++ VL +SGERK+EE+K G  + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+
Sbjct:   78 DWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTL 165          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  205 DAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            +  A   T  D KE P ++VF  D+PGLK  ++KV+VE+D VL ISGER  E+E     + R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  175 SNAPTRTYVRDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            +NAP      D  A      D +E P ++VF  D+PGL+  ++KV+VED N+L ISGER  E E+   K+ R+ER  GKF R+F LPENA +E I A  ++GVL+VTV
Sbjct:   37 ANAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTV 140          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.448e-19
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  202 RDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            ++  A   T  D KE P ++VF  D+PGLK  ++KV++E+  VL ISGER +E+E+   K+ R+ER  GKF+R+F LPENA V+ + A   +GV+TVTV
Sbjct:   42 KETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTV 140          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.448e-19
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  205 DAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            +  A      D KE P ++VF  D+PGLK  ++KV+V+D N+L ISGER +E+E+   ++ R+ER  GKF+R+F LP+NA  E I A  ++GVLTVTV
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTV 144          
The following BLAST results are available for this feature:
BLAST of CK934014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HSP11_CHERU2.214e-2047.2218.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP13_SOYBN3.777e-2054.9517.5 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ORYSJ3.777e-2051.0218.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS186_ORYSJ4.932e-2049.0218.6 kDa class III heat shock protein OS=Oryza sat... [more]
HSP15_SOYBN6.442e-2046.3617.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP41_PEA8.413e-2050.0022.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP12_SOLPE1.099e-1950.0017.6 kDa class I heat shock protein OS=Solanum per... [more]
HS17C_ARATH1.099e-1947.2217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA2.448e-1947.4717.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ2.448e-1947.9617.9 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934014 ID=CK934014; Name=CK934014; organism=Citrus sinensis; type=EST; length=640bp
GGGGAACCAACAAAAGACGAACGAATCCTCATTTGGCAGTAGCAAACATC
AACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCATGGGTTTGG
ACTCGTCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGATGGGGGCG
GACGACTCCGCTGACAACAAGTCATCCAACGCGCCGACGCGCACGTACGT
GAGAGACGCCAAGGCAATGGGGGCGACGCCTGCGGACGTGAAGGAGTATC
CGAACTCGTACGTGTTCATCGTCGATATGCCCGGACTGAAGTCGGGGGAC
ATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGTGAGAG
GAAGCGGGAGGAGGAGAAAGATGGGGCCAAGTATGTGAGAATGGAGAGGA
GGGTTGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTT
GAAGCCATTTCGGCGGTGTGTCAGGACGGAGTGTTGACTGTGACTGTCGA
TAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGA
TTGCTTGAACTTTGAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTC
TTTTCTATTTGCCGGTTGTTATGAATAATTTTGCTTGTGG
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