CK934014

Overview
NameCK934014
Unique NameCK934014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934014_ssr564 microsatellite CK934014_ssr564:564..573. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11505 contig Csv1_Contig11505:61..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.302e-19
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  235 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            D KE P ++VF  D+PG+K  ++KV+VED NVL++SGER +E+E    K+ R+ER  GKF+R+F L E+A VE + A  ++GVLTVTV
Sbjct:   47 DWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTV 134          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.587e-18
Identity = 42/95 (44.21%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  214 AMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            A+     D KE    +  ++D+PGLK  ++K++VE++ VL +SGERKREEEK G ++ R+ER  GKF R+F LP+N ++E++ A  ++GVLT+ +
Sbjct:   67 ALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINL 161          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.535e-18
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  202 RDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            R+  A+     D KE P ++V   D+PG+K  ++KV+VED  VL ISGER RE+E+    + R+ER  GKF+R+F LPENA ++ + A+ ++GVLTV V
Sbjct:   37 RETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVV 135          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  214 AMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            A  +T  D KE P ++VF  D+PGLK  ++K++++D  VL ISGER  E+E     + R+ER  GK +R+F LPENA V+ + A  ++GVLTVTV
Sbjct:   42 AFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTV 136          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17
Identity = 44/99 (44.44%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  202 RDAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            R+  A+     D +E P ++VF  D+PGLK  ++KV++E+D+VL ISGER  E+E     + R+ER  G+F R+F LPEN  ++ + A  ++GVLTVTV
Sbjct:   38 RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTV 136          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.992e-17
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  235 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDG---AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            D KE P ++VF  D+PG++    KV+VED  VL+ISGER REE+ DG    ++  +ER  GKF R+F LP  A V+ +SA   +GVLTVTV
Sbjct:   43 DWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTV 133          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.908e-17
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  205 DAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            +  A+     D KE   ++VF  D+PG+K  ++KV++EDD+VL ISGER  E+E+    + R+ER  G+F RKF LPEN  ++ + A  ++GVLTVTV
Sbjct:   41 ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTV 138          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.706e-17
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  208 AKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            + A+     D KE   ++VF  D+PG+K  ++KV++EDD+VL ISGER  E+E+    + R+ER  G F RKF LPEN  ++ + A  ++GVLTVTV
Sbjct:   40 SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTV 136          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS174_ARATH (17.4 kDa class III heat shock protein OS=Arabidopsis thaliana GN=HSP17.4B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 41/95 (43.16%), Postives = 70/95 (73.68%), Query Frame = 1
Query:  229 PADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLI--SGERKR--EEEKDGAKYVRMERRVGK-FMRKFVLPENANVEAISAVCQDGVLTVTV 498
            P D+ E P  Y+F +D+PG+   DI+V VE++  L+I  +G+RKR  +E ++G+KY+R+ERR+ +  ++KF LPE+A++ +++A  Q+GVLTV +
Sbjct:   43 PIDILESPKEYIFYLDIPGISKSDIQVTVEEERTLVIKSNGKRKRDDDESEEGSKYIRLERRLAQNLVKKFRLPEDADMASVTAKYQEGVLTVVI 137          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  214 AMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVED-DNVLLISGERKR-------EEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            A+     D KE P ++V  VD+PG++ GD++V+V++   VL +SGER+R       E E+DG ++ R ER  G+F R+F +P  A+V  ++A   DGVLTVTV
Sbjct:   68 AVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVTV 170          
The following BLAST results are available for this feature:
BLAST of CK934014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS16B_WHEAT9.302e-1952.2716.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HSP22_ARATH1.587e-1844.2122.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP11_HELAN3.535e-1846.4617.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP11_SOYBN1.754e-1747.3717.3 kDa class I heat shock protein OS=Glycine max... [more]
HS17B_ARATH1.754e-1744.4417.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS166_ORYSJ2.992e-1750.5516.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS178_ARATH3.908e-1744.9017.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH8.706e-1745.3617.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS174_ARATH3.308e-1643.1617.4 kDa class III heat shock protein OS=Arabidops... [more]
HS219_ORYSJ1.642e-1542.7221.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934014 ID=CK934014; Name=CK934014; organism=Citrus sinensis; type=EST; length=640bp
GGGGAACCAACAAAAGACGAACGAATCCTCATTTGGCAGTAGCAAACATC
AACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCATGGGTTTGG
ACTCGTCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGATGGGGGCG
GACGACTCCGCTGACAACAAGTCATCCAACGCGCCGACGCGCACGTACGT
GAGAGACGCCAAGGCAATGGGGGCGACGCCTGCGGACGTGAAGGAGTATC
CGAACTCGTACGTGTTCATCGTCGATATGCCCGGACTGAAGTCGGGGGAC
ATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGTGAGAG
GAAGCGGGAGGAGGAGAAAGATGGGGCCAAGTATGTGAGAATGGAGAGGA
GGGTTGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTT
GAAGCCATTTCGGCGGTGTGTCAGGACGGAGTGTTGACTGTGACTGTCGA
TAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGA
TTGCTTGAACTTTGAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTC
TTTTCTATTTGCCGGTTGTTATGAATAATTTTGCTTGTGG
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