CK934014

Overview
NameCK934014
Unique NameCK934014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934014_ssr564 microsatellite CK934014_ssr564:564..573. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11505 contig Csv1_Contig11505:61..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-14
Identity = 37/88 (42.05%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  235 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            D KE   ++VF+ DMPG++  +++V+VE++ VL ISG+R R  E+ G ++ R+ER   +F+R   LP NAN + + A   +GVLT+T+
Sbjct:   73 DWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITI 160          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.282e-14
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  205 DAKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKD----GAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTV 492
            D   +     D +E  +++  +VD+PG++  D++V+VED+ VL ISGER+REE  +    G  + R ER  G+F R+  LP+NA++++I+A   +GVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  235 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRV-----GKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            D  E  NS++F +++PG    DIKVQ+E+ NVL I GE  +EE+K+   +   ER        +F+R+  LPEN  V+ + A  ++GVLTV V
Sbjct:   25 DWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVV 117          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.438e-11
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  205 DAKAMGATPADVKEYPNSYVFIVDMP-GLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            D  A   T  + +E   +YVF  D+P G+K  +++V+V++ NVL+I+GER    E+ G +   +ER    F  +F LP++A V+ + A    G+LTVTV
Sbjct:   34 DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTV 132          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HS22C_CHLRE (Heat shock 22 kDa protein, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  154 DSADNKSSNAPTRTYVRDAKAMGAT--PADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREE--EKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            D A N+  N         A   G T  P D+ E P ++    D PG+   D+KV++++  VL+++GERK     ++ G K  R ER    F R F LPENAN + I+A    GVL VTV
Sbjct:   21 DRAVNRMINNALGVAPTSAGKAGHTHAPMDIIESPTAFELHADAPGMGPDDVKVELQE-GVLMVTGERKLSHTTKEAGGKVWRSERTAYSFSRAFSLPENANPDGITAAMDKGVLVVTV 138          
BLAST of CK934014 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 44/104 (42.31%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  208 AKAMGATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISG-------ERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 498
            A A      D  E P S+V  +++PGL   D+KVQVED NVL + G       E++RE EKD   +V  ER   +F R+  LP    VE I A   +GVLTV V
Sbjct:   24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHV-AERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVV 126          
The following BLAST results are available for this feature:
BLAST of CK934014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS189_ORYSJ1.064e-1442.0518.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ5.282e-1440.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH6.457e-1240.8615.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HS17B_ORYSJ1.438e-1137.3717.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS22C_CHLRE1.879e-1137.82Heat shock 22 kDa protein, chloroplastic OS=Chlamy... [more]
HSP16_ORYSJ2.454e-1142.3116.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934014 ID=CK934014; Name=CK934014; organism=Citrus sinensis; type=EST; length=640bp
GGGGAACCAACAAAAGACGAACGAATCCTCATTTGGCAGTAGCAAACATC
AACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCATGGGTTTGG
ACTCGTCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGATGGGGGCG
GACGACTCCGCTGACAACAAGTCATCCAACGCGCCGACGCGCACGTACGT
GAGAGACGCCAAGGCAATGGGGGCGACGCCTGCGGACGTGAAGGAGTATC
CGAACTCGTACGTGTTCATCGTCGATATGCCCGGACTGAAGTCGGGGGAC
ATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGTGAGAG
GAAGCGGGAGGAGGAGAAAGATGGGGCCAAGTATGTGAGAATGGAGAGGA
GGGTTGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTT
GAAGCCATTTCGGCGGTGTGTCAGGACGGAGTGTTGACTGTGACTGTCGA
TAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGA
TTGCTTGAACTTTGAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTC
TTTTCTATTTGCCGGTTGTTATGAATAATTTTGCTTGTGG
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