CK934022

Overview
NameCK934022
Unique NameCK934022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: HPCE_ECOLX (Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase OS=Escherichia coli GN=hpcE PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 69/170 (40.59%), Postives = 102/170 (60.00%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQS-------------------SAKLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 454
            EP++FLK  ++  G+  T   P+ ++ +H+E EL VVIG++AR+V E  AMDYV GY V  D   R+                      S  +PK A+PDPHNL L   V+GE+RQ+G+T D+IF +P+LI+++S  MTL  GD+I TGTP+G+    VG ++   + G+
Sbjct:  246 EPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLS--DVGDEVVVEVEGV 413          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: HPAG_SALDU (4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase OS=Salmonella dublin GN=hpaG PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.151e-27
Identity = 68/170 (40.00%), Postives = 98/170 (57.65%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKLP-------------------KSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 454
            EP++F+K  +++  +  T   P+ ++ +H+E EL VVIG+ AR V E  AM+YV GY V  D   R+   +   P                   K AV DPHNL L   V+GE+RQ+G+T D+IF IP+LIS++S  MTL  GD+I TGTP+G+  V  G ++   I G+
Sbjct:  246 EPLVFIKAPNTFTEHHQTSVRPNNVEYMHYEAELVVVIGKTARKVSEAEAMEYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPIGPWIVDKEAVSDPHNLTLRTFVNGELRQEGTTADLIFSIPFLISYLSEFMTLQPGDMIATGTPKGLSDVVPGDEVVLEIKGV 415          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: Y1656_METJA (Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii GN=MJ1656 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.563e-27
Identity = 67/165 (40.61%), Postives = 100/165 (60.61%), Query Frame = 2
Query:    5 PVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSS------AKLPKSAVP---------DPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 454
            P++FLKPTS+ + N   I  P     + +EVELA+VIG+K +++ +  A DY+ GY +  D+TAR++Q        AK   +  P         DP NL +  +V+GEI+QK +TK+MIF +  L+  ++SIMTL+ GD+I TGTP GVG +K G  +   I G+
Sbjct:   62 PIIFLKPTSAIIYNEDYIIRPRISKRVDYEVELAIVIGKKCKNIKKDEANDYIMGYTILNDVTARDLQQKDGQWTRAKSFDTFCPIGPRIVKDIDPMNLNIECRVNGEIKQKSNTKNMIFDVYELVEFVASIMTLYPGDIISTGTPPGVGELKAGDVVECEIEGI 226          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: UGL_BURCJ (Ureidoglycolate lyase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=BceJ2315_61450 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.563e-27
Identity = 75/178 (42.13%), Postives = 96/178 (53.93%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK-------------------LPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 454
            EPV+F K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q                       + +  VPDP  L+LWL++DG   Q G+T+ M+F +  LI+++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   94 EPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQIERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLIAYLSTCMTLQPGDVITTGTPPGVGMGIKPSPVFLKAGQMVRLGIDGL 271          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: UGL_BURM1 (Ureidoglycolate lyase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=Bmul_3283 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.348e-27
Identity = 76/178 (42.70%), Postives = 96/178 (53.93%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK-------------------LPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 454
            EPV+F K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q                       + +  VPDP +L+LWL+VDG   Q G+T+ M+F +  LI+++SS MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   94 EPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAPCKDVDEARALDYVAGYCVVNDVSEREWQIERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQSLDLWLEVDGHRYQNGNTRTMVFTVAQLIAYLSSCMTLQPGDVITTGTPPGVGMGIKPAPVYLKAGQMVRLGIEGL 271          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: UGL_BURCH (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_5521 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.348e-27
Identity = 74/178 (41.57%), Postives = 96/178 (53.93%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK-------------------LPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 454
            EPV+F K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q                       + +  VPDP  L+LWL++DG   Q G+T+ M+F +  L++++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   94 EPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQIERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVITTGTPPGVGMGVKPSPVFLKAGQTVRLGIEGL 271          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: UGL_BURCC (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_4750 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.348e-27
Identity = 74/178 (41.57%), Postives = 96/178 (53.93%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK-------------------LPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 454
            EPV+F K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q                       + +  VPDP  L+LWL++DG   Q G+T+ M+F +  L++++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   94 EPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQIERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVITTGTPPGVGMGVKPSPVFLKAGQTVRLGIEGL 271          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: UGL_BURCA (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_5340 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.348e-27
Identity = 74/178 (41.57%), Postives = 96/178 (53.93%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK-------------------LPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 454
            EPV+F K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q                       + +  VPDP  L+LWL++DG   Q G+T+ M+F +  L++++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   94 EPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQIERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVITTGTPPGVGMGVKPSPVFLKAGQTVRLGIEGL 271          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: YCGM_ECOLI (Uncharacterized protein ycgM OS=Escherichia coli (strain K12) GN=ycgM PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.458e-27
Identity = 70/174 (40.23%), Postives = 94/174 (54.02%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKLPKSAVP------------------------DPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITG 451
            EPVLF+KP ++       + +P    S+HHEVELAV+IG   R   E      + GY VALD+T R++Q   K+ K+  P                        DP N  L L V+GE RQ+G+T DMI KI  LI+++S   TL  GDV+LTGTP GVGP++ G ++T    G
Sbjct:   40 EPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQG--KMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDG 211          
BLAST of CK934022 vs. ExPASy Swiss-Prot
Match: UGL_BURS3 (Ureidoglycolate lyase OS=Burkholderia sp. (strain 383) GN=Bcep18194_B0137 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.458e-27
Identity = 74/178 (41.57%), Postives = 95/178 (53.37%), Query Frame = 2
Query:    2 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK-------------------LPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 454
            EPV+F K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q                       + +  VPDP  L+LWL++DG   Q G+T+ M+F +  LI+++SS MTL  GDVI TGTP GVG      PV  K GQ +  G+ GL
Sbjct:   94 EPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGATCKDVDEARALDYVAGYCVVNDVSEREWQIERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLIAYLSSCMTLQPGDVITTGTPPGVGMGIKPSPVFLKAGQMVRLGVEGL 271          
The following BLAST results are available for this feature:
BLAST of CK934022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HPCE_ECOLX9.412e-3040.59Homoprotocatechuate catabolism bifunctional isomer... [more]
HPAG_SALDU1.151e-2740.004-hydroxyphenylacetate degradation bifunctional is... [more]
Y1656_METJA2.563e-2740.61Uncharacterized protein MJ1656 OS=Methanocaldococc... [more]
UGL_BURCJ2.563e-2742.13Ureidoglycolate lyase OS=Burkholderia cepacia (str... [more]
UGL_BURM13.348e-2742.70Ureidoglycolate lyase OS=Burkholderia multivorans ... [more]
UGL_BURCH3.348e-2741.57Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
UGL_BURCC3.348e-2741.57Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
UGL_BURCA3.348e-2741.57Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
YCGM_ECOLI7.458e-2740.23Uncharacterized protein ycgM OS=Escherichia coli (... [more]
UGL_BURS37.458e-2741.57Ureidoglycolate lyase OS=Burkholderia sp. (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004542_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934022 ID=CK934022; Name=CK934022; organism=Citrus sinensis; type=EST; length=656bp
GGAGCCGGTTTTGTTTCTCAAACCGACGTCGTCTTATTTAGGAAACGGAG
GGACCATCGAGGTACCTCATCCCCTGGATTCGCTTCATCATGAAGTGGAG
CTTGCAGTCGTGATCGGACAGAAAGCTCGAGATGTGCCTGAAACCACTGC
CATGGACTATGTTGGAGGCTATGCAGTGGCACTTGATATGACTGCGAGGG
AAATCCAATCTTCTGCCAAGCTACCAAAGTCAGCAGTGCCTGACCCTCAC
AACTTGGAACTATGGTTAAAGGTTGATGGAGAGATTCGACAGAAAGGCTC
CACTAAGGATATGATTTTTAAGATACCATATCTAATTAGCCACATAAGTT
CAATTATGACACTTTTTGAAGGAGATGTCATATTAACAGGCACTCCACAG
GGCGTTGGCCCTGTAAAAGTTGGTCAAAAGATAACAGCTGGTATAACGGG
CCTCCTGGATGTAAACTTTGATATTGTAAAACGCCGAAGGCCAGGAAGTG
CTTGAACTTATGATGTCCACTCCACTGCAACTGCATTTCAAGCAAAATGT
ACACAAAATTTTCGAGGTGACCCTGACTCATAGCCCTAGCCCGATTTGGC
CATTGACATCCCCACGATTAAGCCTGTATTGATTTCGTCATAACCCTACG
AGGTTG
back to top