CK934024

Overview
NameCK934024
Unique NameCK934024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2179 contig Csv1_Contig2179:61..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_TRIEI (Photosystem I reaction center subunit XI OS=Trichodesmium erythraeum (strain IMS101) GN=psaL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.293e-26
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  202 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 645
            +QP  GDPF+G L TPI+ S     ++ NLP YR  +SP+LRG+EVG+AHG+ +VGP+ K GPLR++ +            V+I +ICL+ YG+ SF    P  A            D L+T++GW++         + G + A+FLL
Sbjct:   10 VQPYKGDPFVGHLSTPISDSDFTRAFIGNLPIYRPGLSPILRGLEVGMAHGYFIVGPWTKLGPLRDSAVANLGGLISTIALVLIATICLSAYGLVSFQGKSPEGA------------DPLKTSEGWSQFTGGFFIGAMGGAVVAFFLL 145          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_SYNY3 (Photosystem I reaction center subunit XI OS=Synechocystis sp. (strain PCC 6803) GN=psaL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.214e-25
Identity = 59/155 (38.06%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  196 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 660
            QV+Q  NGDPF+G L TPI+ S     ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+   GPLR++E             +++ +  L+ YG+ +F              G +   D LQTADGW++         + G   AYFLL  L++
Sbjct:    6 QVVQAYNGDPFVGHLSTPISDSAFTRTFIGNLPAYRKGLSPILRGLEVGMAHGYFLIGPWTLLGPLRDSEYQYIGGLIGALALILVATAALSSYGLVTFQ-------------GEQGSGDTLQTADGWSQFAAGFFVGGMGGAFVAYFLLENLSV 147          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_ODOSI (Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.214e-25
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 1
Query:  202 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGW 579
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLRN++I            ++IL++ LTIYG+A+F +G+ +           +  + LQT   W
Sbjct:    5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRNSDIALFSGFLSTIGLILILTLGLTIYGVAAFGQGQTT-----------ENSNDLQTKKAW 119          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_CYAME (Photosystem I reaction center subunit XI OS=Cyanidioschyzon merolae GN=psaL PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25
Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = 1
Query:  202 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 645
            I+P N DPF+G L TPI SS L   YLS LP YR  VSP LRG+E+G+AHG+ L+GPFV+ GPLRNT+I            +VIL++ + +YG  SF+                 +   L++ DGW +         + G  +AY LL
Sbjct:    5 IKPYNNDPFVGHLATPINSSSLTRAYLSQLPIYRRGVSPFLRGLEIGMAHGYFLIGPFVQLGPLRNTDIKYLAGLLSAIGLIVILTLGMLLYGAVSFT----------------NDSQDLESVDGWRQLASGFLLGAVGGAGFAYLLL 136          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_PORYE (Photosystem I reaction center subunit XI OS=Porphyra yezoensis GN=psaL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.070e-25
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  196 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLP 663
            + I+P N DPF+G+L TP+++S        NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++            ++IL+ CL++YG  SF+              R    D LQT++GW +         + G  +AY LL   N+P
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGTSRNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RADSKDPLQTSEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_CYAP4 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psaL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.070e-25
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  196 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 645
            ++I+P NGDPF G L TPI+ S     ++ NLPAYR  +SP+LRG+E+G+AHG+ L+GP+VK GPLR++++            ++I + CL  YGI SF + E +  P             L TA+GW++           G   A+ LL
Sbjct:    8 ELIKPYNGDPFTGHLSTPISDSDFTRTFIGNLPAYRKGLSPILRGLEIGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILIATACLAAYGIVSFQKEEAAANP-------------LNTAEGWSQFTAGFFVGATGGAFVAFTLL 144          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_PHATR (Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum GN=psaL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.027e-24
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  202 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGW 579
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLR++EI            +VIL++ LTIYG+A+F  G+  T        +    + LQT   W
Sbjct:    5 IKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRDSEIGLLAGFLSTVGLIVILTLGLTIYGVAAF--GQEKT--------QSSNENDLQTKKAW 120          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_THAPS (Photosystem I reaction center subunit XI OS=Thalassiosira pseudonana GN=psaL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.099e-24
Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  202 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGW 579
            I+P N DPF+G L TPITSS L    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPF + GPLRN++I            ++IL++ LTIYG A+F +              K    +LQT   W
Sbjct:    5 IKPYNDDPFVGHLATPITSSSLTRALLKNLPAYRFGLTPLLRGLEIGLAHGYFLIGPFAQLGPLRNSDIGLLAGFLSTIGLILILTLGLTIYGAAAFGQ-------------EKSNGSELQTKKSW 117          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_MICAN (Photosystem I reaction center subunit XI OS=Microcystis aeruginosa (strain NIES-843) GN=psaL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.659e-24
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  196 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 645
            QV+ P N DPFIG L TPI++S     ++ NLPAYR  ++P+LRG+EVG+AHG+ L GP+V  GPLR++E             V++ + CL  YG+ SF              G+    D L++A+GW++         + G   AYFLL
Sbjct:    8 QVVTPYNDDPFIGHLATPISASGFTKAFIGNLPAYRPGLAPILRGLEVGMAHGYFLGGPWVVLGPLRDSEYANIGGLIPALAMVLLATGCLASYGLVSFQ-------------GKAASNDPLKSAEGWSQFAAGFFIGGMGGAFVAYFLL 144          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_ISOGA (Photosystem I reaction center subunit XI OS=Isochrysis galbana GN=psaL PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.698e-24
Identity = 56/158 (35.44%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  196 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYF 669
            + ++P N DPF+G+L TP+T+S     YL NLP YR  ++PLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF +                  + L+++ GW           + G   AY +L   N+ +F
Sbjct:    3 EFVKPFNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLTPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLIIILTLALTIYGLASFQDNGVG--------------ENLESSKGWRNFTSGFTIGALGGASVAYLVLN--NISFF 144          
The following BLAST results are available for this feature:
BLAST of CK934024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_TRIEI9.293e-2638.51Photosystem I reaction center subunit XI OS=Tricho... [more]
PSAL_SYNY31.214e-2538.06Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_ODOSI1.214e-2546.03Photosystem I reaction center subunit XI OS=Odonte... [more]
PSAL_CYAME1.585e-2540.54Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_PORYE2.070e-2538.46Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_CYAP42.070e-2538.00Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_PHATR1.027e-2447.62Photosystem I reaction center subunit XI OS=Phaeod... [more]
PSAL_THAPS5.099e-2445.24Photosystem I reaction center subunit XI OS=Thalas... [more]
PSAL_MICAN6.659e-2438.67Photosystem I reaction center subunit XI OS=Microc... [more]
PSAL_ISOGA8.698e-2435.44Photosystem I reaction center subunit XI OS=Isochr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_C05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934024 ID=CK934024; Name=CK934024; organism=Citrus sinensis; type=EST; length=819bp
GGGGAACAAACACAATCTCAAATGGCTTCTGTTTCTTCTCCAATGGCCAG
CCAGCTCAAGAGTAGCTTTACTTCACCAGTTTCCAGGAGCCTGCTTACTC
CAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCCAAGAGAAGC
CCTCGTTTCCTTGTCAAAGCTATCCAATCTGAAAAGCCAACTTACCAAGT
TATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGAGACTCCAA
TTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTACCAGCTTAT
CGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCCA
TGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAACA
CAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGTG
ATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTCAGTGAAGG
AGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAAGAAGGAGC
CTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTGGAGGATTC
TTCTTTGGTGGAATTTCTGGTGTCATTTGGGCTTATTTCCTGCTTTACGT
TCTTAACCTTCCCTACTTCGTTAAATAGAAATATGTAACATCTACTCTTT
GGTTTTAAGATCCCATGTATCTCAATTTGCTACCCTGTAAATCTACCTGT
TTGGGATGTTTATTGCAAATGAAACTTGCTTCAGTTACTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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