CK934024

Overview
NameCK934024
Unique NameCK934024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2179 contig Csv1_Contig2179:61..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_EMIHU (Photosystem I reaction center subunit XI OS=Emiliania huxleyi GN=psaL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.698e-24
Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  196 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 645
            + ++P N DPF+G+L TP+T+S     YL NLP YR  +SPLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF   E                + L++A GW             G   AY LL
Sbjct:    3 EFVKPYNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLSPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLILILTLGLTIYGLASFQGTEGG--------------ENLESAKGWRNFTSGFSIGAFGGASVAYVLL 138          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_ANASP (Photosystem I reaction center subunit XI OS=Anabaena sp. (strain PCC 7120) GN=psaL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.136e-23
Identity = 58/159 (36.48%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  166 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFL 642
            K + S+    +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     +   P TA  L        PD  Q+ +GW           I G + AYFL
Sbjct:    9 KNLPSDPRNREVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLALSLY-----ANSNPPTA--LASVTVPNPPDAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_MASLA (Photosystem I reaction center subunit XI OS=Mastigocladus laminosus GN=psaL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.484e-23
Identity = 64/174 (36.78%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  139 SKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 660
            SK SP        S+    +V+ P   DP IG LETPI SSPL+ W++ NLPAYR  ++   RG+EVG+AHG+ + GPF K GPLRNT              ++IL+  LT+Y  +   +   S A           P+  Q+++GW           I G + AYFL   L L
Sbjct:    8 SKNSP--------SDPRNREVVFPAYRDPQIGDLETPINSSPLVKWFIGNLPAYRPGITTFRRGLEVGMAHGYWIFGPFAKLGPLRNTVNANLAGLLSALGLIIILTGALTLYANSKPPKPVKSVA-------TPNPPEAFQSSEGWNNFASAFLIGGIGGAVVAYFLTSNLEL 166          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_ANAVT (Photosystem I reaction center subunit XI OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaL PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.938e-23
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  166 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFL 642
            K + S+    +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     +   P     +T+      PD  Q+ +GW           I G + AYFL
Sbjct:    9 KNLPSDPRNREVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLSLSLYA----NSNPPKALASVTV---PNPPDAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_NOSP7 (Photosystem I reaction center subunit XI OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psaL PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.798e-22
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  166 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFL 642
            K + S+    +V+ P   DP +G+LETP+ +SPL  W+++NLPAYR  +SP  RG+EVG+AHG+ + GPF K GPLR+T+             VV+L+  L++Y     +   P   P +T+       D   + + W           I G + AYFL
Sbjct:    9 KNLPSDPRNREVVFPAFRDPQLGNLETPVNASPLSKWFINNLPAYRPGLSPARRGLEVGMAHGYWIFGPFAKLGPLRDTDNANLAGLLAAIGLVVLLTGALSLYS----NSNPPKALPSVTVP--NPPVDAFNSKESWNNFASSFLIGGIGGAVVAYFL 161          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_SYNE7 (Photosystem I reaction center subunit XI OS=Synechococcus elongatus (strain PCC 7942) GN=psaL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.654e-22
Identity = 61/162 (37.65%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  217 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK*KYVTSTLW 702
            G P IG+L TPI SSP    +++ LP YR  +S   RG+E+G+AHGFLL GPF   GPLRNTE             VVIL++CL++YG A      PS A     T     P +L T +GW++         + G   A+F  Y+ + PY      + + +W
Sbjct:   10 GTPEIGNLATPINSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPFSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYGNAG---SGPSAAESTVTT--PNPPQELFTKEGWSEFTSGFILGGLGG---AFFAFYLASTPYVQPLVKIAAGVW 163          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP6 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaL PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.001e-21
Identity = 59/162 (36.42%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  217 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK*KYVTSTLW 702
            G P IG L TP  SSP    +++ LP YR  +S   RG+E+G+AHGFLL GP    GPLRNTE             VVIL++CL++YG A      PS A     T     P +L T +GW++         + G   A+F  Y+ + PY      + + +W
Sbjct:    9 GTPEIGDLATPTNSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPLSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYGNAG---SGPSAAESTVTT--PNPPQELFTKEGWSEFTSGFILGGLGG---AFFAFYLASTPYVQPLVKIAAGVW 162          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_CYAA5 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain ATCC 51142) GN=psaL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.834e-20
Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  217 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVL 654
            GDP IG+L TP+ SS L   ++ NLPAYR  +S   RG+EVG+AHG+ L GPF   GPLRNTE             + IL+I L++Y  AS   G+P      TLT     P+ L T+ GW +           GVI+AY L   L
Sbjct:    8 GDPQIGNLATPVNSSRLSLAFIRNLPAYRRGLSANRRGLEVGMAHGYFLYGPFAILGPLRNTEYASTGGLLSAVAMISILTIALSLY--ASVEVGKPIE----TLT-TPDVPEDLGTSVGWGEFANGFFIGGSGGVIFAYLLCQAL 146          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP2 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.100e-18
Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 1
Query:  217 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFV 672
            GDP +G+L TPI +S     +++NLP YR  +S   RG+EVG+AHG+ L GPF   GPLRN +             + +L++ L++YG    S       P  TLT     P+ L T +GW++           G + AY L   L + Y +
Sbjct:    8 GDPQVGNLATPINASAFSKAFINNLPGYRQGLSAQRRGLEVGMAHGYFLYGPFALLGPLRNADFAGVAGLLGTVGLISLLTLALSLYGSVGVS------TPTATLT-TPNPPENLGTKEGWSEFAAGFLIGGCGGALVAYGLCIALPMMYTI 152          
BLAST of CK934024 vs. ExPASy Swiss-Prot
Match: PSAL_PROM4 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9211) GN=psaL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.623e-17
Identity = 51/153 (33.33%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  202 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 660
            ++P++ DPF+G+LETP+ S      +++NLP YR+ +SP  RG+EVG A G+LL GPF   GPLRNT+             V IL+    +Y   +    +P+  P       +  P  L T  GW             G ++A+ L   L+L
Sbjct:   39 VKPVS-DPFVGNLETPVNSGYFTKAFINNLPFYRSGISPNFRGLEVGAAFGYLLYGPFAMTGPLRNTDFALTAGLLSTIGAVHILTALFVLY---TAPGKDPNVQPSDCTV--ENPPTDLFTRTGWTDFTSGFWLGGCGGAVFAWLLCGTLHL 185          
The following BLAST results are available for this feature:
BLAST of CK934024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_EMIHU8.698e-2438.67Photosystem I reaction center subunit XI OS=Emilia... [more]
PSAL_ANASP1.136e-2336.48Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_MASLA1.484e-2336.78Photosystem I reaction center subunit XI OS=Mastig... [more]
PSAL_ANAVT1.938e-2335.22Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_NOSP72.798e-2235.22Photosystem I reaction center subunit XI OS=Nostoc... [more]
PSAL_SYNE73.654e-2237.65Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_SYNP69.001e-2136.42Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_CYAA55.834e-2041.78Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_SYNP21.100e-1834.21Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_PROM44.623e-1733.33Photosystem I reaction center subunit XI OS=Prochl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004542_C05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934024 ID=CK934024; Name=CK934024; organism=Citrus sinensis; type=EST; length=819bp
GGGGAACAAACACAATCTCAAATGGCTTCTGTTTCTTCTCCAATGGCCAG
CCAGCTCAAGAGTAGCTTTACTTCACCAGTTTCCAGGAGCCTGCTTACTC
CAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCCAAGAGAAGC
CCTCGTTTCCTTGTCAAAGCTATCCAATCTGAAAAGCCAACTTACCAAGT
TATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGAGACTCCAA
TTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTACCAGCTTAT
CGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCCA
TGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAACA
CAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGTG
ATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTCAGTGAAGG
AGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAAGAAGGAGC
CTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTGGAGGATTC
TTCTTTGGTGGAATTTCTGGTGTCATTTGGGCTTATTTCCTGCTTTACGT
TCTTAACCTTCCCTACTTCGTTAAATAGAAATATGTAACATCTACTCTTT
GGTTTTAAGATCCCATGTATCTCAATTTGCTACCCTGTAAATCTACCTGT
TTGGGATGTTTATTGCAAATGAAACTTGCTTCAGTTACTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
back to top