CK934035

Overview
NameCK934035
Unique NameCK934035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934035 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  293 RPWAELADRSGFSKPESFSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLSFIG 748
            RPW E+ D S  S P  + EA   ++ N SYFR NY           LI +P S++  + +   WI LY  R ++  +V+ G+   ++  L +L ++++     T VG  ++ ++++G  ++ AHGAFR  +DLFLDE+  SA  G L   G
Sbjct:   48 RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEE--SARRGGLVSAG 197          
BLAST of CK934035 vs. ExPASy Swiss-Prot
Match: PR1G2_ARATH (PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = 2
Query:  266 SLRYGFAQRRPWAELADRSGFSKPESFSEATLRIRKNYSYFRVNYLTXXXXXXXFSLIT-NPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQE 712
            +L    +  RPW+EL     FS PESFS   LR + N++YF VNY         F+LIT +P +L+++  ++A W+  + FR  + PL+++     +R  L  L++ S++  + T+    L   V VG  L   H  FR  ++LFL+E +
Sbjct:   27 NLTTAISSHRPWSELIFSGDFSLPESFSSLLLRSKTNFNYFFVNYTIIVSTCAAFALITASPVALIVVGAIIALWLIFHFFR--EDPLILWSFQVGDRTVLLFLVLASVWAIWFTNSAVNLAVGVSVGLLLCIIHAVFRNSDELFLEEDD 174          
BLAST of CK934035 vs. ExPASy Swiss-Prot
Match: PRA1D_ARATH (PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  293 RPWAELADRSGFSKPESFSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLSFIGG 751
            RPW +  D S FS P S ++AT R+ +N ++FR+NY          +LIT P ++L  + +  +W FLY  R  ++PL +FG T  +     +LI LSI     T V    ++ V  G  ++  H A R  +DL  D+ E S     LS  GG
Sbjct:   21 RPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRPIAILAFIAVGLAWFFLYFAR--EEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGVWLRALTTVGFGVLVLILHAALRGTDDLVSDDLE-SPYGPMLSTSGG 170          
BLAST of CK934035 vs. ExPASy Swiss-Prot
Match: PR1G1_ARATH (PRA1 family protein G1 OS=Arabidopsis thaliana GN=PRA1G1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 45/146 (30.82%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  299 WAELADRSGFSKPESFSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFL 736
            W+E        +P SFS A  R++ N  +F VNY+          LI +P +L+ +   +A W+ LY +R  D PLV++GR  S+R  +  LI+ S++  +  +    LI  V+    L   H   R  +DLF+ E++    + FL
Sbjct:   41 WSEFLAFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAASITLFLIGDPMALVTVASFVAMWLLLYFYR--DHPLVLYGRHISDRVIVFGLILGSLWALWFINSLQCLILGVVTSVLLCLVHAIIRNSDDLFVQEKDVVVPSNFL 184          
The following BLAST results are available for this feature:
BLAST of CK934035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PRA1E_ARATH3.815e-2033.55PRA1 family protein E OS=Arabidopsis thaliana GN=P... [more]
PR1G2_ARATH1.357e-1733.33PRA1 family protein G2 OS=Arabidopsis thaliana GN=... [more]
PRA1D_ARATH8.796e-1734.64PRA1 family protein D OS=Arabidopsis thaliana GN=P... [more]
PR1G1_ARATH1.075e-1430.82PRA1 family protein G1 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_B11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934035 ID=CK934035; Name=CK934035; organism=Citrus sinensis; type=EST; length=880bp
GGGGGTCTACACTCCACACGCTATAATCTATATTCGCTCCTCTTCATCCC
ACCCTGCCTCAATATCTTTCAATTCATTAGCCCCCAAAGAACGATAAGAA
AAAGGTAACAACAATAAAATTCCCAAAATGACCTCCGCATCGCCGCCAGT
CCTCCCAATCTCCAACTCCCAACCGACCACCACGGCGTCCTCCGCCACCT
CGGTCCAATCCCAACCACCAGTGGCGACCCCGGCTTTCCGCGCCCTAATC
AACCACATCTCCGACTCACTCCGTTACGGCTTCGCCCAGCGCCGCCCGTG
GGCCGAACTCGCCGACCGATCCGGCTTCTCCAAACCGGAGTCGTTCTCCG
AAGCCACCCTCCGCATCCGCAAGAACTACTCCTATTTCCGAGTCAATTAC
CTCACGGTCGTCGCTGTCGTCGTTGCTTTCTCTCTCATCACCAATCCTTT
CTCTCTCCTCATGCTCGTCGGACTCCTTGCCTCCTGGATCTTCCTCTACC
TCTTCCGCCCCTCCGATCAGCCGCTCGTCGTATTCGGCCGCACGTTCAGC
GAGCGCGAGACGCTTGGTGTCTTGATCGTTTTGAGCATCTTCGTCTTTTT
CCTCACCAGTGTCGGATCGATCTTGATCTCGGCTGTGATGGTGGGGGCTG
GTCTGATTTGTGCTCACGGTGCGTTTAGGGTTCCTGAAGATCTGTTCTTG
GACGAACAAGAGCCTTCTGCCAGCACCGGATTCTTGTCCTTCATCGGTGG
CGCCGCCTCGAATGCCGCCGCCACCGCTGCACCGGCCGTTTCCGCACGCG
TTTGAGGTAGCGGTTTGATTTGCTAATTGAATGATTTCTAGTTTTTTGTT
TTTTTTTGGGGGGGGCTGTTGAAAGCCGNN
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