CK934050

Overview
NameCK934050
Unique NameCK934050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9656 contig Csv1_Contig9656:213..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 256.144 bits (653), Expect = 1.751e-67
Identity = 124/181 (68.51%), Postives = 152/181 (83.98%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGE 646
            +Q+ DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRT  ++ K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQ+FD++ RWL ELR HAD NIVI++ GNKSDL   R+V  ED +  A+KEGL FLETSALEATNVE AF T+L EI++I++KK L A E
Sbjct:    6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQE 186          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.987e-67
Identity = 126/209 (60.29%), Postives = 163/209 (77.99%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            DY+FKVVLIGDS VGKS +L+RF RNEFSL+SK+TIGVEF TR+L +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++R  +F+++ RWL+ELR H D NIV++L+GNKSDL    AV T++ K FA++E L+F+ETSALE+TNVENAF  VLT+I+ IV+K+++ AG+  G+G      G+KI +      +  K   CC
Sbjct:   12 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPG---KGEKINIKDDVSAV--KKGGCC 215          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.936e-66
Identity = 125/217 (57.60%), Postives = 169/217 (77.88%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            G+ + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ IV++K ++  + + N    S +   I VP   +  P     CC+
Sbjct:    2 GNRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS--DRRENDMSPSNNVVPIHVPPTTENKP--KMQCCQ 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.314e-66
Identity = 128/219 (58.45%), Postives = 165/219 (75.34%), Query Frame = 2
Query:   86 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            GGY   +   DY+FK+VLIGDS VGKS +L+RF+RNEF+L+SK+TIGVEF TR++ +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA++VYDI+R  +F+++ RWL+ELR H D+NIVI+L+GNK+DL   RAV TEDAK FA++E  FF+ETSALE+ NVENAF  VLTEI+ +V +K L  G+     +PA+L   + +  G       K   CC
Sbjct:    3 GGYRAEDD-YDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGD-----DPAALPKGQTINVGKDDVSAVKKVGCC 215          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.314e-66
Identity = 125/217 (57.60%), Postives = 168/217 (77.42%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ IV++K ++  + + N    S +   I VP   +  P     CC+
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS--DRRENDMSPSNNVVPIHVPPTTENKP--KVQCCQ 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.314e-66
Identity = 125/217 (57.60%), Postives = 168/217 (77.42%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ IV++K ++  + + N    S +   I VP   +  P     CC+
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS--DRRENDMSPSNNVVPIHVPPTTENKP--KVQCCQ 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.314e-66
Identity = 125/217 (57.60%), Postives = 168/217 (77.42%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ IV++K ++  + + N    S +   I VP   +  P     CC+
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS--DRRENDMSPSNNVVPIHVPPTTENKP--KVQCCQ 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.314e-66
Identity = 125/217 (57.60%), Postives = 168/217 (77.42%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ IV++K ++  + + N    S +   I VP   +  P     CC+
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS--DRRENDMSPSNNVVPIHVPPTTENKP--KVQCCQ 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.314e-66
Identity = 125/217 (57.60%), Postives = 168/217 (77.42%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ IV++K ++  + + N    S +   I VP   +  P     CC+
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS--DRRENDMSPSNNVVPIHVPPTTENKP--KVQCCQ 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.314e-66
Identity = 125/217 (57.60%), Postives = 168/217 (77.42%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ IV++K ++  + + N    S +   I VP   +  P     CC+
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS--DRRENDMSPSNNVVPIHVPPTTENKP--KVQCCQ 214          
The following BLAST results are available for this feature:
BLAST of CK934050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA2C_ARATH1.751e-6768.51Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RIC2_ORYSJ2.987e-6760.29Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11A_CHICK1.936e-6657.60Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11B_TOBAC4.314e-6658.45Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB11A_RAT4.314e-6657.60Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT4.314e-6657.60Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB4.314e-6657.60Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG4.314e-6657.60Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE4.314e-6657.60Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN4.314e-6657.60Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934050 ID=CK934050; Name=CK934050; organism=Citrus sinensis; type=EST; length=847bp
GGGGGTTCAATATTGTGATTTGTGAAGTTGGTCGGTCTTGGTAAGCTCGA
TCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGAGGCTATGGAGAT
CCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTTAATCGGAGACTC
GGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTCGAAACGAGTTCA
GTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAAACTAGGACTTTA
GTTATTCAACATAAGAGCGTCAAGGCACAGATCTGGGACACTGCTGGCCA
AGAACGATACAGGGCTGTCACAAGTGCATATTACAGAGGTGCTGTTGGGG
CAATGCTGGTTTACGACATTAGCAGACGCCAGAGCTTTGATCACATAACC
CGTTGGCTGGAAGAGTTGCGAAGCCATGCTGACAAGAATATTGTTATCAT
TCTCATTGGCAACAAAAGTGACCTTGAGGAGCAGCGGGCGGTTCCTACAG
AAGATGCCAAAGAATTTGCTCAGAAGGAAGGACTATTCTTCTTGGAGACC
TCAGCACTGGAAGCAACTAATGTGGAAAATGCTTTCATGACTGTGTTGAC
TGAGATTTTCAACATTGTAAACAAGAAGAATCTAACTGCTGGTGAAGGTC
AAGGCAATGGCAACCCTGCATCCCTTTCTGGCAAGAAGATTCTTGTTCCT
GGCCCAGCTCAAGAAATCCCTGCCAAGAGCAGCATGTGCTGTAGAACATG
ATGCAATTTGATATTACTCTCATATTGCACGAATCGGTTTTATGTAGTTA
ATAACATTTTTTTGAAAGGTGTTGTGCGTTTGGTGTGTATATTTTTC
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