CK934050

Overview
NameCK934050
Unique NameCK934050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.070e-40
Identity = 78/185 (42.16%), Postives = 127/185 (68.65%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV-----NKKNLTAGEGQG 655
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +Q K +K QIWDTAGQER+  +T++YYRGA+G MLVYDI+  +SF++I++WL  +  HA++++  +L+GNK D++++R VP    ++ A++ G+ F ETSA    N+E AF+T+  +I         N +N+    G G
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGG 191          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.070e-40
Identity = 78/185 (42.16%), Postives = 127/185 (68.65%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV-----NKKNLTAGEGQG 655
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +Q K +K QIWDTAGQER+  +T++YYRGA+G MLVYDI+  +SF++I++WL  +  HA++++  +L+GNK D++++R VP    ++ A++ G+ F ETSA    N+E AF+T+  +I         N +N+    G G
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGG 191          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.397e-40
Identity = 78/164 (47.56%), Postives = 116/164 (70.73%), Query Frame = 2
Query:  107 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITR-WLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 595
            ++ DY+FK+++IGDS  GKS +L RFA N +S    +TIGV+F+ +T+ I + ++K QIWDTAGQER+R +TS YYRGA G + VYD++ + SFDHIT  WL+++  +A  N+  +LIGNK DL + R V  ++AK  A++  + ++E SA   +NVE AF T+
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTI 165          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.397e-40
Identity = 78/185 (42.16%), Postives = 126/185 (68.11%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV-----NKKNLTAGEGQG 655
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++ + +T+ +Q K +K QIWDTAGQER+  +T++YYRGA+G MLVYDI+  +SF++I++WL  +  HA++++  +L+GNK D+E++R VP    ++ A++ G+ F ETSA    N+E AF+T+  +I         N +N+    G G
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGG 191          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.397e-40
Identity = 78/185 (42.16%), Postives = 127/185 (68.65%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV-----NKKNLTAGEGQG 655
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +Q K +K QIWDTAGQER+  +T++YYRGA+G MLVYDI+  +SF++I++WL  +  HA++++  +L+GNK D++++R VP    ++ A++ G+ F ETSA    N+E AF+T+  +I         N +N+    G G
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGG 191          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.383e-40
Identity = 79/166 (47.59%), Postives = 120/166 (72.29%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 613
            D+ FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ +TL +  K++K QIWDTAGQER+R +TS+YYRGA G +LVYD + + SF ++ +W+ E+  +A +N+  +L+GNK+DL  ++ V +  AK FA+  G+ F+ETSA  ATNVE  F+++  +I N
Sbjct:    8 DFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKN 173          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.310e-40
Identity = 78/165 (47.27%), Postives = 113/165 (68.48%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEE-QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 607
            DY+ K++LIGDS VGKS +L RF+   F+     TIG++F+ RT+ +  K +K QIWDTAGQER+R +T+AYYRGA+G +LVYD++   SF++I  W+  +  HA  N+  IL+GNK+D++E +RAVPT   +  A + G+ F ETSA    NVE  F ++  +I
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.310e-40
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLS 679
            D++FK+++IGDS VGKS +L RFA N FS     TIGV+F+ RT+ I  + VK QIWDTAGQER+R +TS YYRG  G ++VYD++  +SF ++ RWL E+  + D ++  IL+GNK+D  E++ V TEDA +FA + G+   ETSA E  NVE  F   +TE+     K NL   + Q   +   L+
Sbjct:    6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKDNLAKQQQQQQNDVVKLT 191          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.310e-40
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLS 679
            D++FK+++IGDS VGKS +L RFA N FS     TIGV+F+ RT+ I  + VK QIWDTAGQER+R +TS YYRG  G ++VYD++  +SF ++ RWL E+  + D ++  IL+GNK+D  E++ V TEDA +FA + G+   ETSA E  NVE  F   +TE+     K NL   + Q   +   L+
Sbjct:    6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKDNLAKQQQQQQNDVVKLT 191          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.310e-40
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLS 679
            D++FK+++IGDS VGKS +L RFA N FS     TIGV+F+ RT+ I  + VK QIWDTAGQER+R +TS YYRG  G ++VYD++  +SF ++ RWL E+  + D ++  IL+GNK+D  E++ V TEDA +FA + G+   ETSA E  NVE  F   +TE+     K NL   + Q   +   L+
Sbjct:    6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKDNLAKQQQQQQNDVVKLT 191          
The following BLAST results are available for this feature:
BLAST of CK934050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_MOUSE1.070e-4042.16Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.070e-4042.16Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB1_THEAN1.397e-4047.56Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB10_CHICK1.397e-4042.16Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB10_CANFA1.397e-4042.16Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB1D_DICDI2.383e-4047.59Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RB1BV_BETVU5.310e-4047.27Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB35_RAT5.310e-4046.28Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE5.310e-4046.28Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN5.310e-4046.28Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934050 ID=CK934050; Name=CK934050; organism=Citrus sinensis; type=EST; length=847bp
GGGGGTTCAATATTGTGATTTGTGAAGTTGGTCGGTCTTGGTAAGCTCGA
TCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGAGGCTATGGAGAT
CCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTTAATCGGAGACTC
GGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTCGAAACGAGTTCA
GTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAAACTAGGACTTTA
GTTATTCAACATAAGAGCGTCAAGGCACAGATCTGGGACACTGCTGGCCA
AGAACGATACAGGGCTGTCACAAGTGCATATTACAGAGGTGCTGTTGGGG
CAATGCTGGTTTACGACATTAGCAGACGCCAGAGCTTTGATCACATAACC
CGTTGGCTGGAAGAGTTGCGAAGCCATGCTGACAAGAATATTGTTATCAT
TCTCATTGGCAACAAAAGTGACCTTGAGGAGCAGCGGGCGGTTCCTACAG
AAGATGCCAAAGAATTTGCTCAGAAGGAAGGACTATTCTTCTTGGAGACC
TCAGCACTGGAAGCAACTAATGTGGAAAATGCTTTCATGACTGTGTTGAC
TGAGATTTTCAACATTGTAAACAAGAAGAATCTAACTGCTGGTGAAGGTC
AAGGCAATGGCAACCCTGCATCCCTTTCTGGCAAGAAGATTCTTGTTCCT
GGCCCAGCTCAAGAAATCCCTGCCAAGAGCAGCATGTGCTGTAGAACATG
ATGCAATTTGATATTACTCTCATATTGCACGAATCGGTTTTATGTAGTTA
ATAACATTTTTTTGAAAGGTGTTGTGCGTTTGGTGTGTATATTTTTC
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